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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 847ChIP-seq
  • 134single cell RNA-seq
  • 61ATAC-seq
  • 38total RNA-seq
  • 27snATAC-seq
  • 16WGBS
  • 11DNase-seq
  • 5GRO-seq
  • 4RRBS
  • 2FAIRE-seq
  • 1Hi-C
  • 1pCHi-C
Assay category
  • 847DNA binding
  • 172Transcription
  • 101DNA accessibility
  • 20DNA methylation
  • 13D chromatin structure
Target of assay
  • 444transcription factor
  • 230histone modification
  • 229histone
  • 168control
  • 118broad histone mark
  • 110narrow histone mark
  • 88RNA binding protein
  • 82recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 322November, 2017
  • 194August, 2017
  • 94December, 2017
  • 83November, 2018
  • 58October, 2018
  • 50July, 2018
  • 47September, 2018
  • 45February, 2021
  • 44April, 2018
  • 41September, 2020
  • 34December, 2018
  • 33February, 2018
  • 30January, 2019
  • 24May, 2022
  • 17October, 2017
  • 11September, 2017
  • 7August, 2020
  • 5January, 2018
  • 4August, 2018
  • 3June, 2018
  • 1March, 2019
Available data
  • 3257bam
  • 3034bigWig
  • 1809bed narrowPeak
  • 1477tsv
  • 1147fastq
  • 1034bigBed narrowPeak
  • 398tagAlign
  • 321bed broadPeak
  • 284bigBed broadPeak
  • 273bed bed3+
  • 161txt
  • 112zippedFastqFolder
  • 64xls
  • 35bed bedMethyl
  • 35bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1140Homo sapiens
Biosample type
  • 420cell line
  • 304primary cell
  • 284tissue
  • 135in vitro differentiated cells
  • 4stem cell
Organ
  • 462liver
  • 316pancreas
  • 192epithelium
  • 98connective tissue
  • 56blood
  • 56bodily fluid
  • 41adipose tissue
  • 26embryo
  • 24spleen
  • 21brain
  • 6vasculature
  • 3blood vessel
  • 2musculature of body
Project
  • 1054AMP
  • 93HPAP
Genome assembly (visualization)
  • 874hg19
  • 817GRCh38
  • 5hg18
Lab
  • 1028AMP-T2D consortium
  • 93Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 28inconsistent control
  • 27audit script error
  • 11inconsistent ontology term
Audit category:
  • 86missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
files.read_length!
  • 101
BIOSAMPLE
ASSAY

1147 results

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Clear Filters
ChIP-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
snATAC-seq
WGBS
DNase-seq
GRO-seq
RRBS
FAIRE-seq
Hi-C
pCHi-C
cell line
HepG2357511
GM1287856
primary cell
Langerhans cell3427
pancreatic alpha cell131213156
pancreatic beta cell1312101
pancreatic ductal cell1394
pancreatic endocrine cell23
tissue
liver67121
islet of Langerhans28620811
body of pancreas33422
spleen20121
pancreas1611
in vitro differentiated cells
adipocyte531
pancreatic endoderm1831
hepatocyte15
definitive endodermal cell811
primitive gut cell811
stem cell
hESC31
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