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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 608ChIP-seq
  • 237total RNA-seq
  • 134single cell RNA-seq
  • 61ATAC-seq
  • 27snATAC-seq
  • 17WGBS
  • 5GRO-seq
  • 2FAIRE-seq
  • 1DNase-seq
  • 1Hi-C
  • 1pCHi-C
Assay category
  • 608DNA binding
  • 371Transcription
  • 91DNA accessibility
  • 17DNA methylation
  • 13D chromatin structure
Target of assay
  • 354transcription factor
  • 135histone modification
  • 134histone
  • 114control
  • 82recombinant protein
  • 69broad histone mark
  • 67RNA binding protein
  • 64narrow histone mark
  • 19chromatin remodeller
  • 3other context
  • 3other post-translational modification
Date released
  • 217August, 2017
  • 210November, 2017
  • 76February, 2023
  • 73September, 2018
  • 72November, 2018
  • 68December, 2017
  • 60October, 2018
  • 50July, 2018
  • 45February, 2021
  • 44April, 2018
  • 41September, 2020
  • 35December, 2018
  • 29January, 2019
  • 24May, 2022
  • 17February, 2018
  • 8October, 2017
  • 7August, 2020
  • 5January, 2018
  • 5September, 2017
  • 4August, 2018
  • 3June, 2018
  • 1March, 2019
Available data
  • 3134bam
  • 2954bigWig
  • 1617bed narrowPeak
  • 1600tsv
  • 1094fastq
  • 894bigBed narrowPeak
  • 359tagAlign
  • 236bed bed3+
  • 229bed broadPeak
  • 201bigBed broadPeak
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 32bed bedMethyl
  • 32bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1094Homo sapiens
Biosample type
  • 361primary cell
  • 320tissue
  • 314cell line
  • 97in vitro differentiated cells
  • 2stem cell
Organ
  • 419pancreas
  • 343liver
  • 226epithelium
  • 97connective tissue
  • 59blood
  • 59bodily fluid
  • 41adipose tissue
  • 23spleen
  • 9embryo
  • 1brain
Project
  • 925AMP
  • 169HPAP
Genome assembly (visualization)
  • 782hg19
  • 761GRCh38
  • 5hg18
Lab
  • 899AMP-T2D consortium
  • 169Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 28inconsistent control
  • 27audit script error
  • 8inconsistent ontology term
Audit category:
  • 74missing controlled_by
Audit category:
  • 25inconsistent control read length
files.read_length!
  • 36
BIOSAMPLE
ASSAY

1094 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
GRO-seq
FAIRE-seq
DNase-seq
Hi-C
pCHi-C
primary cell
pancreatic alpha cell25212136
Langerhans cell3427
pancreatic beta cell2211210
exocrine cell39
pancreatic ductal cell13494
tissue
islet of Langerhans109762011
liver611
body of pancreas3342
spleen2012
subcutaneous adipose tissue121
cell line
HepG2248511
GM1287859
in vitro differentiated cells
adipocyte53
hepatocyte15
pancreatic endoderm341
definitive endodermal cell321
primitive gut cell121
stem cell
hESC11
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