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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 729ChIP-seq
  • 232total RNA-seq
  • 134single cell RNA-seq
  • 51ATAC-seq
  • 17WGBS
  • 12DNase-seq
  • 11snATAC-seq
  • 4RRBS
  • 1FAIRE-seq
  • 1pCHi-C
Assay category
  • 729DNA binding
  • 366Transcription
  • 75DNA accessibility
  • 21DNA methylation
Target of assay
  • 379transcription factor
  • 215histone modification
  • 214histone
  • 130control
  • 107narrow histone mark
  • 106broad histone mark
  • 88RNA binding protein
  • 70recombinant protein
  • 33chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 271November, 2017
  • 266August, 2017
  • 83November, 2018
  • 76February, 2023
  • 73September, 2018
  • 60October, 2018
  • 50July, 2018
  • 46December, 2017
  • 44April, 2018
  • 41September, 2020
  • 39February, 2018
  • 34December, 2018
  • 29February, 2021
  • 24May, 2022
  • 20January, 2019
  • 16October, 2017
  • 7August, 2020
  • 6September, 2017
  • 4August, 2018
  • 3June, 2018
Available data
  • 3248bam
  • 3059bigWig
  • 1725bed narrowPeak
  • 1595tsv
  • 1192fastq
  • 966bigBed narrowPeak
  • 398tagAlign
  • 317bed broadPeak
  • 281bigBed broadPeak
  • 262bed bed3+
  • 161txt
  • 113zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1185Homo sapiens
Biosample type
  • 385primary cell
  • 363cell line
  • 320tissue
  • 123in vitro differentiated cells
  • 1stem cell
Organ
  • 455pancreas
  • 360liver
  • 248epithelium
  • 96connective tissue
  • 55blood
  • 55bodily fluid
  • 42adipose tissue
  • 24spleen
  • 21embryo
  • 20brain
  • 6vasculature
  • 3blood vessel
  • 2musculature of body
Project
  • 1039AMP
  • 153HPAP
Genome assembly (visualization)
  • 904hg19
  • 852GRCh38
Lab
  • 1014AMP-T2D consortium
  • 153Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 11audit script error
  • 10inconsistent ontology term
  • 1inconsistent control
Audit category:
  • 87missing controlled_by
Audit category:
  • 37inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
files.read_length!
  • 50
BIOSAMPLE
ASSAY

1192 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
WGBS
DNase-seq
snATAC-seq
RRBS
FAIRE-seq
pCHi-C
primary cell
pancreatic alpha cell135212106
pancreatic beta cell1321127
Langerhans cell3411
exocrine cell39
pancreatic ductal cell13494
cell line
HepG23071
GM1287855
tissue
islet of Langerhans269761911
body of pancreas33422
liver21121
spleen20121
pancreas122
in vitro differentiated cells
adipocyte501
pancreatic endoderm144
hepatocyte15
definitive endodermal cell62
primitive gut cell62
stem cell
hESC1
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