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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 804ChIP-seq
  • 237total RNA-seq
  • 134single cell RNA-seq
  • 61ATAC-seq
  • 17WGBS
  • 12DNase-seq
  • 10snATAC-seq
  • 5GRO-seq
  • 4RRBS
  • 2FAIRE-seq
  • 1Hi-C
  • 1pCHi-C
Assay category
  • 804DNA binding
  • 371Transcription
  • 85DNA accessibility
  • 21DNA methylation
  • 13D chromatin structure
Target of assay
  • 445transcription factor
  • 187histone modification
  • 186histone
  • 167control
  • 98broad histone mark
  • 87RNA binding protein
  • 87narrow histone mark
  • 82recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 324November, 2017
  • 267August, 2017
  • 94December, 2017
  • 88November, 2018
  • 76February, 2023
  • 58October, 2018
  • 50July, 2018
  • 44April, 2018
  • 42September, 2018
  • 41September, 2020
  • 39February, 2018
  • 35December, 2018
  • 30January, 2019
  • 28February, 2021
  • 24May, 2022
  • 17October, 2017
  • 11September, 2017
  • 7August, 2020
  • 5January, 2018
  • 4August, 2018
  • 3June, 2018
  • 1March, 2019
Available data
  • 3339bam
  • 3117bigWig
  • 1785bed narrowPeak
  • 1601tsv
  • 1288fastq
  • 1041bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 268bed bed3+
  • 161txt
  • 132zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tbi
  • 1vcf
Organism
  • 1281Homo sapiens
Biosample type
  • 427cell line
  • 369tissue
  • 352primary cell
  • 136in vitro differentiated cells
  • 4stem cell
Organ
  • 465liver
  • 423pancreas
  • 236epithelium
  • 96connective tissue
  • 60blood
  • 60bodily fluid
  • 44adipose tissue
  • 27embryo
  • 24spleen
  • 21brain
  • 6vasculature
  • 3blood vessel
  • 2musculature of body
Project
  • 1136AMP
  • 152HPAP
Genome assembly (visualization)
  • 956hg19
  • 899GRCh38
  • 5hg18
Lab
  • 1110AMP-T2D consortium
  • 152Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 28inconsistent control
  • 11inconsistent ontology term
  • 10audit script error
Audit category:
  • 38missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
files.read_length!
  • 51
BIOSAMPLE
ASSAY

1288 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
WGBS
DNase-seq
snATAC-seq
GRO-seq
RRBS
FAIRE-seq
Hi-C
pCHi-C
cell line
HepG2360511
GM1287860
tissue
islet of Langerhans229762011
liver67121
body of pancreas33422
spleen20121
pancreas1421
primary cell
pancreatic alpha cell135212136
pancreatic beta cell13211210
Langerhans cell3410
exocrine cell39
pancreatic acinar cell495
in vitro differentiated cells
adipocyte481
pancreatic endoderm1841
hepatocyte15
definitive endodermal cell821
primitive gut cell821
stem cell
hESC31
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