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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 664ChIP-seq
  • 237total RNA-seq
  • 134single cell RNA-seq
  • 51ATAC-seq
  • 27snATAC-seq
  • 17WGBS
  • 12DNase-seq
  • 5GRO-seq
  • 4RRBS
  • 2FAIRE-seq
  • 1Hi-C
  • 1pCHi-C
Assay category
  • 664DNA binding
  • 371Transcription
  • 92DNA accessibility
  • 21DNA methylation
  • 13D chromatin structure
Target of assay
  • 349transcription factor
  • 164histone modification
  • 163histone
  • 146control
  • 81broad histone mark
  • 81narrow histone mark
  • 77RNA binding protein
  • 25chromatin remodeller
  • 12recombinant protein
  • 2other context
  • 2other post-translational modification
Date released
  • 255August, 2017
  • 253November, 2017
  • 76February, 2023
  • 73December, 2017
  • 73September, 2018
  • 62November, 2018
  • 50July, 2018
  • 45February, 2021
  • 44April, 2018
  • 39February, 2018
  • 38September, 2020
  • 33December, 2018
  • 31October, 2018
  • 24May, 2022
  • 18January, 2019
  • 17October, 2017
  • 11September, 2017
  • 5January, 2018
  • 4August, 2018
  • 3June, 2018
  • 1March, 2019
Available data
  • 3199bam
  • 2989bigWig
  • 1647bed narrowPeak
  • 1600tsv
  • 1155fastq
  • 902bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 273bed bed3+
  • 161txt
  • 152zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1148Homo sapiens
Biosample type
  • 398primary cell
  • 329cell line
  • 329tissue
  • 95in vitro differentiated cells
  • 4stem cell
Organ
  • 441pancreas
  • 356liver
  • 232epithelium
  • 61connective tissue
  • 50blood
  • 50bodily fluid
  • 35adipose tissue
  • 27embryo
  • 21brain
  • 11spleen
  • 6vasculature
  • 3blood vessel
  • 2musculature of body
Project
  • 996AMP
  • 159HPAP
Genome assembly (visualization)
  • 841hg19
  • 771GRCh38
  • 5hg18
Lab
  • 970AMP-T2D consortium
  • 159Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 27audit script error
  • 27inconsistent control
  • 11inconsistent ontology term
Audit category:
  • 87missing controlled_by
Audit category:
  • 52inconsistent control read length
  • 8inconsistent control run_type
  • 2inconsistent assembly
files.read_length!
  • 76
BIOSAMPLE
ASSAY

1155 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
GRO-seq
RRBS
FAIRE-seq
Hi-C
pCHi-C
primary cell
pancreatic alpha cell13521266
Langerhans cell3427
pancreatic beta cell1321127
exocrine cell39
pancreatic ductal cell13494
cell line
HepG2272511
GM1287850
tissue
islet of Langerhans289762011
liver67121
body of pancreas13422
pancreas1621
white adipose tissue12
in vitro differentiated cells
adipocyte221
pancreatic endoderm1841
definitive endodermal cell821
primitive gut cell821
Posterior foregut51
stem cell
hESC31
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