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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 161ChIP-seq
  • 130total RNA-seq
  • 60ATAC-seq
  • 50single cell RNA-seq
  • 27snATAC-seq
  • 9DNase-seq
  • 5WGBS
  • 1Hi-C
  • 1pCHi-C
Assay category
  • 180Transcription
  • 161DNA binding
  • 96DNA accessibility
  • 5DNA methylation
  • 13D chromatin structure
Target of assay
  • 109transcription factor
  • 41control
  • 21RNA binding protein
  • 11chromatin remodeller
  • 8histone modification
  • 7histone
  • 4narrow histone mark
  • 3broad histone mark
  • 3other context
  • 3other post-translational modification
Date released
  • 108August, 2017
  • 43November, 2017
  • 41September, 2018
  • 40November, 2018
  • 39February, 2021
  • 37October, 2018
  • 33December, 2018
  • 24May, 2022
  • 24September, 2020
  • 13January, 2019
  • 8July, 2018
  • 7April, 2018
  • 7August, 2020
  • 7October, 2017
  • 5September, 2017
  • 4December, 2017
  • 2August, 2018
  • 1June, 2018
  • 1March, 2019
Available data
  • 2590bam
  • 2477bigWig
  • 1503tsv
  • 1294bed narrowPeak
  • 660bigBed narrowPeak
  • 444fastq
  • 359tagAlign
  • 234bed broadPeak
  • 223bed bed3+
  • 206bigBed broadPeak
  • 161txt
  • 93zippedFastqFolder
  • 64xls
  • 28bed bedMethyl
  • 28bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tar
  • 1tbi
  • 1vcf
Organism
  • 444Homo sapiens
Biosample type
  • 202tissue
  • 137primary cell
  • 103cell line
  • 2in vitro differentiated cells
Organ
  • 208pancreas
  • 79liver
  • 70epithelium
  • 45blood
  • 45bodily fluid
  • 27connective tissue
  • 26adipose tissue
  • 17spleen
  • 1brain
Project
  • 374AMP
  • 70HPAP
Genome assembly (visualization)
  • 317hg19
  • 312GRCh38
Lab
  • 348AMP-T2D consortium
  • 70Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 27audit script error
Audit category:
  • 6missing controlled_by
Audit category:
  • 8inconsistent control run_type
  • 7inconsistent control read length
files.run_type!
  • single-ended
BIOSAMPLE
ASSAY

444 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
tissue
islet of Langerhans9720
body of pancreas13422
spleen13112
liver132
subcutaneous adipose tissue121
primary cell
Langerhans cell3327
pancreatic alpha cell10132
pancreatic beta cell10102
pancreatic acinar cell452
pancreatic ductal cell442
cell line
HepG251511
GM1287845
in vitro differentiated cells
adipocyte1
white fat cell1
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