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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
single cell RNA-seq
28
total RNA-seq
22
ATAC-seq
21
ChIP-seq
Assay category
94
Transcription
22
DNA accessibility
21
DNA binding
Target of assay
histone
51
histone modification
28
narrow histone mark
23
broad histone mark
17
control
4
RNA binding protein
4
transcription factor
1
chromatin remodeller
Date released
40
September, 2018
33
July, 2018
29
April, 2018
15
August, 2017
5
December, 2017
5
September, 2017
4
November, 2017
3
August, 2018
2
October, 2018
1
June, 2018
Available data
224
bam
201
bigWig
150
tsv
137
fastq
63
bed narrowPeak
47
bigBed narrowPeak
18
bed bed3+
18
bed broadPeak
18
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
3
hic
3
tagAlign
2
bedpe bed3+
2
hdf5
1
tar
Organism
137
Homo sapiens
Biosample type
132
primary cell
5
in vitro differentiated cells
Organ
339
liver
302
pancreas
137
epithelium
75
connective tissue
59
blood
59
bodily fluid
43
adipose tissue
18
spleen
15
embryo
11
brain
4
vasculature
2
blood vessel
2
musculature of body
Project
137
AMP
Genome assembly (visualization)
122
hg19
120
GRCh38
Lab
137
AMP-T2D consortium
Klaus Kaestner, Upenn
Audit category:
3
inconsistent ontology term
lab.title!
Klaus Kaestner, Upenn
target.investigated_as!
histone
recombinant protein
BIOSAMPLE
ASSAY
137 results
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single cell RNA-seq
total RNA-seq
ATAC-seq
ChIP-seq
primary cell
pancreatic beta cell
12
10
7
6
pancreatic alpha cell
12
10
6
6
pancreatic acinar cell
9
4
5
pancreatic ductal cell
9
4
4
pancreatic delta cell
11
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in vitro differentiated cells
hepatocyte
3
Hepatic endoderm
2
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