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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
85
ChIP-seq
Assay category
85
DNA binding
Target of assay
450
transcription factor
179
histone modification
178
histone
151
control
95
broad histone mark
85
RNA binding protein
82
narrow histone mark
82
recombinant protein
35
chromatin remodeller
5
other context
5
other post-translational modification
Date released
35
November, 2017
21
November, 2018
11
October, 2018
8
August, 2017
6
January, 2019
2
December, 2017
2
December, 2018
Available data
97
bigWig
96
bed narrowPeak
94
bam
85
bigBed narrowPeak
85
fastq
7
bed broadPeak
7
bigBed broadPeak
2
bed bed3+
1
tar
Organism
85
Homo sapiens
Biosample type
63
cell line
15
tissue
4
in vitro differentiated cells
3
primary cell
Organ
57
liver
10
blood
10
bodily fluid
9
connective tissue
8
pancreas
5
adipose tissue
epithelium
3
brain
2
vasculature
1
blood vessel
Project
85
AMP
Genome assembly (visualization)
82
hg19
78
GRCh38
Lab
85
AMP-T2D consortium
Audit category:
3
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent control run_type
lab.title!
Maike Sander, UCSD
organ_slims!
artery
epithelium
BIOSAMPLE
ASSAY
85 results
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ChIP-seq
cell line
HepG2
53
GM12878
10
tissue
body of pancreas
5
omental fat pad
3
islet of Langerhans
2
subcutaneous adipose tissue
2
liver
1
+ See 2 more…
in vitro differentiated cells
adipocyte
4
primary cell
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
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