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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
ChIP-seq
1
ATAC-seq
1
DNase-seq
1
pCHi-C
1
single cell RNA-seq
Assay category
23
DNA binding
2
DNA accessibility
1
Transcription
Target of assay
18
control
5
RNA binding protein
5
transcription factor
Date released
August, 2017
23
October, 2018
July, 2018
1
April, 2018
1
August, 2018
1
November, 2018
1
October, 2017
Available data
520
bam
503
bigWig
477
tsv
29
bed narrowPeak
27
fastq
25
bigBed narrowPeak
16
bed bed3+
8
bed broadPeak
8
bigBed broadPeak
6
bed bed3
4
bed bedgraph
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hdf5
Organism
27
Homo sapiens
Biosample type
25
tissue
1
in vitro differentiated cells
1
primary cell
Organ
437
liver
264
pancreas
195
epithelium
60
blood
60
bodily fluid
27
connective tissue
27
embryo
26
adipose tissue
24
spleen
21
brain
6
vasculature
3
blood vessel
0
lung
Project
27
AMP
Genome assembly (visualization)
8
GRCh38
8
hg19
Lab
27
AMP-T2D consortium
month_released!
August, 2017
July, 2018
BIOSAMPLE
ASSAY
27 results
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ChIP-seq
ATAC-seq
DNase-seq
pCHi-C
single cell RNA-seq
tissue
omental fat pad
11
1
1
subcutaneous adipose tissue
12
in vitro differentiated cells
white fat cell
1
primary cell
pancreatic stellate cell
1
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