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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 676ChIP-seq
  • 148total RNA-seq
  • 134single cell RNA-seq
  • 56ATAC-seq
  • 27snATAC-seq
  • 13WGBS
  • 9DNase-seq
  • 5GRO-seq
  • 1FAIRE-seq
  • 1Hi-C
  • 1pCHi-C
Assay category
  • 676DNA binding
  • 282Transcription
  • 93DNA accessibility
  • 13DNA methylation
  • 13D chromatin structure
Target of assay
  • 407transcription factor
  • 137control
  • 127histone
  • 127histone modification
  • 82recombinant protein
  • 81RNA binding protein
  • 69broad histone mark
  • 58narrow histone mark
  • 33chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 324November, 2017
  • August, 2017
  • 94December, 2017
  • 88November, 2018
  • 76February, 2023
  • 73September, 2018
  • 60October, 2018
  • 50July, 2018
  • 45February, 2021
  • 44April, 2018
  • 41September, 2020
  • 39February, 2018
  • 35December, 2018
  • 30January, 2019
  • 24May, 2022
  • 17October, 2017
  • 11September, 2017
  • 7August, 2020
  • 5January, 2018
  • 4August, 2018
  • 3June, 2018
  • 1March, 2019
Available data
  • 3110bam
  • 2897bigWig
  • 1675bed narrowPeak
  • 1511tsv
  • 1071fastq
  • 1000bigBed narrowPeak
  • 313tagAlign
  • 281bed broadPeak
  • 270bigBed broadPeak
  • 240bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 30bed bedMethyl
  • 30bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1071Homo sapiens
Biosample type
  • 427cell line
  • 351primary cell
  • 202tissue
  • 87in vitro differentiated cells
  • 4stem cell
Organ
  • 437liver
  • 303pancreas
  • 228epithelium
  • 60blood
  • 60bodily fluid
  • 29connective tissue
  • 27embryo
  • 26adipose tissue
  • 24spleen
  • 21brain
  • 6vasculature
  • 3blood vessel
Project
  • 902AMP
  • 169HPAP
Genome assembly (visualization)
  • 753hg19
  • 702GRCh38
  • 5hg18
Lab
  • 876AMP-T2D consortium
  • 169Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 28inconsistent control
  • 27audit script error
  • 11inconsistent ontology term
Audit category:
  • 50missing controlled_by
Audit category:
  • 40inconsistent control read length
  • 8inconsistent control run_type
month_released!
  • August, 2017
BIOSAMPLE
ASSAY

1071 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
GRO-seq
FAIRE-seq
Hi-C
pCHi-C
cell line
HepG2360511
GM1287860
primary cell
pancreatic alpha cell5212126
Langerhans cell3427
pancreatic beta cell21129
exocrine cell39
pancreatic ductal cell13494
tissue
liver422
body of pancreas33422
islet of Langerhans68620
spleen20121
omental fat pad1111
in vitro differentiated cells
pancreatic endoderm1841
hepatocyte15
definitive endodermal cell821
primitive gut cell821
Posterior foregut51
stem cell
hESC31
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