Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
389
ChIP-seq
5
total RNA-seq
3
DNase-seq
2
WGBS
1
ATAC-seq
1
Hi-C
1
RRBS
Assay category
389
DNA binding
5
Transcription
4
DNA accessibility
3
DNA methylation
1
3D chromatin structure
Target of assay
294
transcription factor
82
recombinant protein
64
control
53
RNA binding protein
28
histone modification
27
histone
20
chromatin remodeller
15
broad histone mark
12
narrow histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
December, 2017
53
November, 2018
28
August, 2017
5
January, 2019
1
December, 2018
Available data
618
bam
572
bigWig
402
fastq
391
bed narrowPeak
308
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
402
Homo sapiens
Biosample type
367
cell line
35
tissue
Organ
471
pancreas
402
liver
238
epithelium
101
connective tissue
60
blood
60
bodily fluid
adipose tissue
24
spleen
21
brain
14
embryo
6
vasculature
3
blood vessel
2
musculature of body
Project
402
AMP
Genome assembly (visualization)
340
hg19
293
GRCh38
Lab
402
AMP-T2D consortium
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
month_released!
December, 2017
organ_slims!
adipose tissue
eye
BIOSAMPLE
ASSAY
402 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
WGBS
ATAC-seq
Hi-C
RRBS
cell line
HepG2
360
5
1
1
tissue
liver
29
2
1
1
right lobe of liver
1
1
Download