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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 823ChIP-seq
  • 237total RNA-seq
  • 134single cell RNA-seq
  • 61ATAC-seq
  • 27snATAC-seq
  • 17WGBS
  • 12DNase-seq
  • 5GRO-seq
  • 4RRBS
  • 2FAIRE-seq
  • 1pCHi-C
Assay category
  • 823DNA binding
  • 371Transcription
  • 102DNA accessibility
  • 21DNA methylation
Target of assay
  • 426transcription factor
  • 230histone modification
  • 229histone
  • 164control
  • 118broad histone mark
  • 110narrow histone mark
  • 87RNA binding protein
  • 82recombinant protein
  • 34chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 324November, 2017
  • 287August, 2017
  • 94December, 2017
  • 88November, 2018
  • 76February, 2023
  • 73September, 2018
  • 60October, 2018
  • 50July, 2018
  • 45February, 2021
  • 44April, 2018
  • 41September, 2020
  • 39February, 2018
  • December, 2018
  • 30January, 2019
  • 24May, 2022
  • 17October, 2017
  • 11September, 2017
  • 7August, 2020
  • 5January, 2018
  • 4August, 2018
  • 3June, 2018
  • 1March, 2019
Available data
  • 3358bam
  • 3139bigWig
  • 1787bed narrowPeak
  • 1600tsv
  • 1323fastq
  • 1012bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 273bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1316Homo sapiens
Biosample type
  • 409primary cell
  • 399cell line
  • 370tissue
  • 141in vitro differentiated cells
  • 4stem cell
Organ
  • 471pancreas
  • 464liver
  • 257epithelium
  • 101connective tissue
  • 44adipose tissue
  • 33blood
  • 33bodily fluid
  • 27embryo
  • 21brain
  • 17spleen
  • 6vasculature
  • 3blood vessel
  • 2musculature of body
Project
  • 1154AMP
  • 169HPAP
Genome assembly (visualization)
  • 978hg19
  • 921GRCh38
  • 5hg18
Lab
  • 1128AMP-T2D consortium
  • 169Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 27audit script error
  • 27inconsistent control
  • 11inconsistent ontology term
Audit category:
  • 89missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
month_released!
  • December, 2018
BIOSAMPLE
ASSAY

1323 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
GRO-seq
RRBS
FAIRE-seq
pCHi-C
primary cell
pancreatic alpha cell135212136
Langerhans cell3427
pancreatic beta cell13211210
exocrine cell39
pancreatic ductal cell13494
cell line
HepG236051
GM1287833
tissue
islet of Langerhans289762011
liver67121
body of pancreas33422
pancreas1621
spleen13121
in vitro differentiated cells
adipocyte531
pancreatic endoderm1841
hepatocyte15
definitive endodermal cell821
primitive gut cell821
stem cell
hESC31
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