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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 832ChIP-seq
  • 232total RNA-seq
  • 134single cell RNA-seq
  • 61ATAC-seq
  • 27snATAC-seq
  • 17WGBS
  • 12DNase-seq
  • 5GRO-seq
  • 4RRBS
  • 2FAIRE-seq
  • 1Hi-C
  • 1pCHi-C
Assay category
  • 832DNA binding
  • 366Transcription
  • 102DNA accessibility
  • 21DNA methylation
  • 13D chromatin structure
Target of assay
  • 440transcription factor
  • 223histone modification
  • 222histone
  • 164control
  • 114broad histone mark
  • 107narrow histone mark
  • 83RNA binding protein
  • 82recombinant protein
  • 30chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 324November, 2017
  • 287August, 2017
  • 94December, 2017
  • 88November, 2018
  • 76February, 2023
  • 73September, 2018
  • 60October, 2018
  • 50July, 2018
  • 45February, 2021
  • 44April, 2018
  • 41September, 2020
  • 39February, 2018
  • 35December, 2018
  • January, 2019
  • 24May, 2022
  • 17October, 2017
  • 11September, 2017
  • 7August, 2020
  • 5January, 2018
  • 4August, 2018
  • 3June, 2018
  • 1March, 2019
Available data
  • 3362bam
  • 3143bigWig
  • 1796bed narrowPeak
  • 1595tsv
  • 1328fastq
  • 1021bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 273bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1321Homo sapiens
Biosample type
  • 409primary cell
  • 404cell line
  • 370tissue
  • 141in vitro differentiated cells
  • 4stem cell
Organ
  • 471pancreas
  • 460liver
  • 257epithelium
  • 101connective tissue
  • 44adipose tissue
  • 42blood
  • 42bodily fluid
  • 27embryo
  • 21brain
  • 17spleen
  • 6vasculature
  • 3blood vessel
  • 2musculature of body
Project
  • 1159AMP
  • 169HPAP
Genome assembly (visualization)
  • 982hg19
  • 925GRCh38
  • 5hg18
Lab
  • 1133AMP-T2D consortium
  • 169Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 28inconsistent control
  • 27audit script error
  • 11inconsistent ontology term
Audit category:
  • 89missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
month_released!
  • January, 2019
BIOSAMPLE
ASSAY

1328 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
GRO-seq
RRBS
FAIRE-seq
Hi-C
pCHi-C
primary cell
pancreatic alpha cell135212136
Langerhans cell3427
pancreatic beta cell13211210
exocrine cell39
pancreatic ductal cell13494
cell line
HepG236011
GM1287842
tissue
islet of Langerhans289762011
liver67121
body of pancreas33422
pancreas1621
spleen13121
in vitro differentiated cells
adipocyte531
pancreatic endoderm1841
hepatocyte15
definitive endodermal cell821
primitive gut cell821
stem cell
hESC31
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