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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
171
ChIP-seq
Assay category
171
DNA binding
Target of assay
186
histone modification
185
histone
171
transcription factor
98
broad histone mark
87
narrow histone mark
84
control
43
RNA binding protein
19
chromatin remodeller
16
recombinant protein
3
other context
3
other post-translational modification
Date released
November, 2017
64
November, 2018
42
December, 2017
28
December, 2018
14
January, 2019
13
August, 2017
10
October, 2018
Available data
216
bigWig
210
bed narrowPeak
202
bam
171
fastq
163
bigBed narrowPeak
9
bed bed3+
9
tagAlign
2
bed broadPeak
2
bigBed broadPeak
Organism
171
Homo sapiens
Biosample type
96
cell line
62
tissue
11
in vitro differentiated cells
2
primary cell
Organ
86
liver
51
blood
51
bodily fluid
connective tissue
17
adipose tissue
17
pancreas
6
spleen
3
embryo
2
epithelium
Project
171
AMP
Genome assembly (visualization)
169
GRCh38
168
hg19
Lab
171
AMP-T2D consortium
Audit category:
28
inconsistent control
Audit category:
9
missing controlled_by
Audit category:
9
inconsistent control read length
4
inconsistent control run_type
month_released!
November, 2017
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
171 results
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ChIP-seq
cell line
GM12878
51
HepG2
45
tissue
liver
37
body of pancreas
9
islet of Langerhans
7
spleen
6
right lobe of liver
2
+ See 1 more…
in vitro differentiated cells
pancreatic endoderm
3
Posterior foregut
2
definitive endodermal cell
2
hepatocyte
2
primitive gut cell
2
primary cell
skeletal muscle myoblast
2
See all biosamples
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