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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
403
ChIP-seq
5
total RNA-seq
1
ATAC-seq
1
Hi-C
1
RRBS
1
WGBS
Assay category
403
DNA binding
5
Transcription
2
DNA methylation
1
3D chromatin structure
1
DNA accessibility
Target of assay
278
transcription factor
77
control
66
recombinant protein
45
histone modification
44
histone
38
RNA binding protein
25
broad histone mark
19
narrow histone mark
18
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
63
December, 2017
November, 2018
28
August, 2017
5
January, 2019
1
December, 2018
Available data
628
bam
570
bigWig
412
fastq
390
bed narrowPeak
307
bigBed narrowPeak
174
tsv
86
tagAlign
60
bed broadPeak
60
bigBed broadPeak
10
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
412
Homo sapiens
Biosample type
321
cell line
76
tissue
15
in vitro differentiated cells
Organ
427
pancreas
412
liver
255
epithelium
77
connective tissue
45
blood
45
bodily fluid
27
embryo
20
adipose tissue
19
brain
15
spleen
6
vasculature
3
blood vessel
2
musculature of body
Project
412
AMP
Genome assembly (visualization)
341
hg19
291
GRCh38
Lab
412
AMP-T2D consortium
Audit category:
27
inconsistent control
Audit category:
10
missing controlled_by
Audit category:
22
inconsistent control read length
4
inconsistent control run_type
month_released!
November, 2018
October, 2018
BIOSAMPLE
ASSAY
412 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
RRBS
WGBS
cell line
HepG2
315
5
1
tissue
liver
63
1
1
right lobe of liver
10
1
in vitro differentiated cells
hepatocyte
15
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