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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 787ChIP-seq
  • 237total RNA-seq
  • 133single cell RNA-seq
  • 61ATAC-seq
  • 27snATAC-seq
  • 10WGBS
  • 5GRO-seq
  • 4RRBS
  • 3DNase-seq
  • 1FAIRE-seq
  • 1Hi-C
  • 1pCHi-C
Assay category
  • 787DNA binding
  • 370Transcription
  • 92DNA accessibility
  • 14DNA methylation
  • 13D chromatin structure
Target of assay
  • 390transcription factor
  • 230histone modification
  • 229histone
  • 162control
  • 118broad histone mark
  • 110narrow histone mark
  • 68RNA binding protein
  • 66recombinant protein
  • 29chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 324November, 2017
  • 287August, 2017
  • 94December, 2017
  • November, 2018
  • 76February, 2023
  • 73September, 2018
  • 60October, 2018
  • 50July, 2018
  • 45February, 2021
  • 44April, 2018
  • 41September, 2020
  • 39February, 2018
  • 35December, 2018
  • 30January, 2019
  • 24May, 2022
  • 17October, 2017
  • 11September, 2017
  • 7August, 2020
  • 5January, 2018
  • 4August, 2018
  • 3June, 2018
  • 1March, 2019
Available data
  • 3305bam
  • 3089bigWig
  • 1744bed narrowPeak
  • 1600tsv
  • 1270fastq
  • 969bigBed narrowPeak
  • 398tagAlign
  • 313bed broadPeak
  • 276bigBed broadPeak
  • 264bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 29bed bedMethyl
  • 29bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 7bed bedgraph
  • 7csv
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1263Homo sapiens
Biosample type
  • 408primary cell
  • 366cell line
  • 351tissue
  • 141in vitro differentiated cells
  • 4stem cell
Organ
  • 464pancreas
  • 412liver
  • 257epithelium
  • 100connective tissue
  • 45blood
  • 45bodily fluid
  • 43adipose tissue
  • 27embryo
  • 19brain
  • 15spleen
  • 6vasculature
  • 3blood vessel
  • 2musculature of body
Project
  • 1101AMP
  • 169HPAP
Genome assembly (visualization)
  • 937hg19
  • 872GRCh38
  • 5hg18
Lab
  • 1075AMP-T2D consortium
  • 169Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 28inconsistent control
  • 27audit script error
  • 11inconsistent ontology term
Audit category:
  • 86missing controlled_by
Audit category:
  • 51inconsistent control read length
  • 5inconsistent control run_type
  • 3inconsistent assembly
month_released!
  • November, 2018
BIOSAMPLE
ASSAY

1270 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
GRO-seq
RRBS
DNase-seq
FAIRE-seq
Hi-C
pCHi-C
primary cell
pancreatic alpha cell135212136
Langerhans cell3427
pancreatic beta cell13211210
exocrine cell39
pancreatic ductal cell13494
cell line
HepG231551
GM1287845
tissue
islet of Langerhans289762011
liver6311
body of pancreas334
pancreas16
spleen141
in vitro differentiated cells
adipocyte531
pancreatic endoderm1841
hepatocyte15
definitive endodermal cell821
primitive gut cell821
stem cell
hESC31
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