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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ChIP-seq
18
ATAC-seq
6
total RNA-seq
Assay category
75
DNA binding
18
DNA accessibility
6
Transcription
Target of assay
40
transcription factor
18
control
17
histone
17
histone modification
9
narrow histone mark
8
broad histone mark
2
RNA binding protein
2
chromatin remodeller
Date released
318
November, 2017
258
August, 2017
88
November, 2018
75
December, 2017
58
October, 2018
39
February, 2018
39
February, 2021
39
February, 2023
35
December, 2018
30
January, 2019
24
May, 2022
22
September, 2020
17
July, 2018
17
October, 2017
15
April, 2018
12
September, 2018
6
September, 2017
5
January, 2018
2
June, 2018
1
August, 2018
1
March, 2019
0
April, 2020
Available data
99
bam
99
fastq
94
bed narrowPeak
76
bigWig
54
zippedFastqFolder
36
bigBed narrowPeak
16
bed bed3+
7
txt
Organism
99
Homo sapiens
Biosample type
72
tissue
24
in vitro differentiated cells
3
stem cell
Organ
63
liver
24
pancreas
epithelium
13
embryo
Project
99
AMP
Genome assembly (visualization)
79
hg19
61
GRCh38
Lab
75
AMP-T2D consortium
24
Kyle Gaulton, UCSD
Audit category:
27
inconsistent control
Audit category:
1
missing controlled_by
Audit category:
10
inconsistent control read length
organ_slims!
epithelium
BIOSAMPLE
ASSAY
99 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
tissue
liver
38
islet of Langerhans
18
6
right lobe of liver
10
in vitro differentiated cells
pancreatic endoderm
9
Posterior foregut
5
definitive endodermal cell
5
primitive gut cell
5
stem cell
hESC
3
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