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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
173
ChIP-seq
89
total RNA-seq
5
ATAC-seq
4
RRBS
4
WGBS
3
DNase-seq
1
FAIRE-seq
Assay category
173
DNA binding
89
Transcription
9
DNA accessibility
8
DNA methylation
Target of assay
103
histone modification
102
histone
52
narrow histone mark
49
broad histone mark
47
transcription factor
31
control
RNA binding protein
3
chromatin remodeller
Date released
287
November, 2017
279
August, 2017
90
December, 2017
76
February, 2023
73
September, 2018
67
November, 2018
50
July, 2018
49
October, 2018
45
February, 2021
44
April, 2018
September, 2020
39
February, 2018
33
December, 2018
24
January, 2019
24
May, 2022
17
October, 2017
11
September, 2017
7
August, 2020
5
January, 2018
4
August, 2018
3
June, 2018
1
March, 2019
Available data
279
fastq
274
bam
264
bigWig
135
bed narrowPeak
89
tsv
85
tagAlign
40
bigBed narrowPeak
39
bed broadPeak
31
bed bed3+
13
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
272
Homo sapiens
Biosample type
173
tissue
56
primary cell
50
in vitro differentiated cells
Organ
166
pancreas
68
connective tissue
29
epithelium
28
liver
18
adipose tissue
2
musculature of body
Project
279
AMP
Genome assembly (visualization)
247
hg19
242
GRCh38
Lab
279
AMP-T2D consortium
Audit category:
38
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
month_released!
September, 2020
organ_slims!
adrenal gland
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
279 results
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ChIP-seq
total RNA-seq
ATAC-seq
RRBS
WGBS
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
20
89
1
1
liver
25
1
1
pancreas
14
white adipose tissue
12
adipose tissue
2
3
+ See 3 more…
primary cell
skeletal muscle myoblast
13
1
1
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic endocrine cell
12
pancreatic acinar cell
1
in vitro differentiated cells
adipocyte
49
1
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