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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
324
ChIP-seq
3
single cell RNA-seq
1
pCHi-C
Assay category
324
DNA binding
3
Transcription
Target of assay
244
transcription factor
66
recombinant protein
59
control
37
RNA binding protein
18
histone
18
histone modification
15
chromatin remodeller
10
narrow histone mark
8
broad histone mark
2
other context
2
other post-translational modification
Date released
324
November, 2017
287
August, 2017
94
December, 2017
88
November, 2018
76
February, 2023
73
September, 2018
60
October, 2018
50
July, 2018
45
February, 2021
44
April, 2018
41
September, 2020
39
February, 2018
December, 2018
30
January, 2019
24
May, 2022
17
October, 2017
11
September, 2017
7
August, 2020
5
January, 2018
4
August, 2018
3
June, 2018
1
March, 2019
Available data
395
bam
337
bigWig
328
fastq
313
bed narrowPeak
312
bigBed narrowPeak
78
tagAlign
70
bed broadPeak
64
bigBed broadPeak
3
tar
3
tsv
1
bedpe bed3+
Organism
328
Homo sapiens
Biosample type
315
cell line
12
primary cell
1
in vitro differentiated cells
Organ
315
liver
9
brain
9
epithelium
6
vasculature
3
blood vessel
3
pancreas
1
adipose tissue
1
connective tissue
Project
328
AMP
Genome assembly (visualization)
278
hg19
226
GRCh38
Lab
328
AMP-T2D consortium
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
month_released!
December, 2018
organ_slims!
mammary gland
BIOSAMPLE
ASSAY
328 results
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Clear Filters
ChIP-seq
single cell RNA-seq
pCHi-C
cell line
HepG2
315
primary cell
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
pancreatic alpha cell
2
pancreatic acinar cell
1
in vitro differentiated cells
white fat cell
1
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