Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 820ChIP-seq
  • 237total RNA-seq
  • 134single cell RNA-seq
  • 59ATAC-seq
  • 27snATAC-seq
  • 14WGBS
  • 11DNase-seq
  • 5GRO-seq
  • 4RRBS
  • 2FAIRE-seq
  • 1Hi-C
Assay category
  • 820DNA binding
  • 371Transcription
  • 99DNA accessibility
  • 18DNA methylation
  • 13D chromatin structure
Target of assay
  • 437transcription factor
  • 229histone modification
  • 228histone
  • 149control
  • 118broad histone mark
  • 109narrow histone mark
  • 84RNA binding protein
  • 82recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 324November, 2017
  • 269August, 2017
  • 94December, 2017
  • 87November, 2018
  • 76February, 2023
  • 73September, 2018
  • 50July, 2018
  • 45February, 2021
  • 44April, 2018
  • 41September, 2020
  • 39February, 2018
  • 37October, 2018
  • 35December, 2018
  • 30January, 2019
  • 24May, 2022
  • 16October, 2017
  • 11September, 2017
  • 7August, 2020
  • 5January, 2018
  • 3August, 2018
  • 3June, 2018
  • 1March, 2019
Available data
  • 2950bam
  • 2744bigWig
  • 1804bed narrowPeak
  • 1314fastq
  • 1199tsv
  • 1032bigBed narrowPeak
  • 390tagAlign
  • 319bed broadPeak
  • 283bigBed broadPeak
  • 267bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 34bed bedMethyl
  • 34bigBed bedMethyl
  • 23hic
  • 22bedpe bed3+
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1307Homo sapiens
Biosample type
  • 427cell line
  • 409primary cell
  • 334tissue
  • 140in vitro differentiated cells
  • 4stem cell
Organ
  • 471pancreas
  • 465liver
  • 257epithelium
  • 101connective tissue
  • 60blood
  • 60bodily fluid
  • adipose tissue
  • 27embryo
  • 24spleen
  • 21brain
  • 6vasculature
  • 3blood vessel
  • 2musculature of body
Project
  • 1145AMP
  • 169HPAP
Genome assembly (visualization)
  • 987hg19
  • 928GRCh38
  • 5hg18
Lab
  • 1119AMP-T2D consortium
  • 169Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 28inconsistent control
  • 27audit script error
  • 11inconsistent ontology term
Audit category:
  • 77missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
organ_slims!
  • adipose tissue
BIOSAMPLE
ASSAY

1314 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
GRO-seq
RRBS
FAIRE-seq
Hi-C
cell line
HepG2360511
GM1287860
primary cell
pancreatic alpha cell135212136
Langerhans cell3427
pancreatic beta cell13211210
exocrine cell39
pancreatic ductal cell13494
tissue
islet of Langerhans289762011
liver67121
body of pancreas33422
spleen20121
pancreas1621
in vitro differentiated cells
adipocyte531
pancreatic endoderm1841
hepatocyte15
definitive endodermal cell821
primitive gut cell821
stem cell
hESC31
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego