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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 767ChIP-seq
  • 237total RNA-seq
  • 131single cell RNA-seq
  • 59ATAC-seq
  • 27snATAC-seq
  • 10DNase-seq
  • 8WGBS
  • 5GRO-seq
  • 4RRBS
  • 2FAIRE-seq
  • 1Hi-C
Assay category
  • 767DNA binding
  • 368Transcription
  • 98DNA accessibility
  • 12DNA methylation
  • 13D chromatin structure
Target of assay
  • 415transcription factor
  • 204histone modification
  • 203histone
  • 143control
  • 106broad histone mark
  • 97narrow histone mark
  • 82recombinant protein
  • 80RNA binding protein
  • 34chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 324November, 2017
  • 215August, 2017
  • 94December, 2017
  • 87November, 2018
  • 76February, 2023
  • 73September, 2018
  • 48July, 2018
  • 43April, 2018
  • 41September, 2020
  • 39February, 2018
  • 39February, 2021
  • 37October, 2018
  • 35December, 2018
  • 30January, 2019
  • 24May, 2022
  • 16October, 2017
  • 11September, 2017
  • 7August, 2020
  • 5January, 2018
  • 3August, 2018
  • 3June, 2018
  • 1March, 2019
Available data
  • 2799bam
  • 2599bigWig
  • 1742bed narrowPeak
  • 1251fastq
  • 1123tsv
  • 1014bigBed narrowPeak
  • 376tagAlign
  • 312bed broadPeak
  • 276bigBed broadPeak
  • 247bed bed3+
  • 161txt
  • 112zippedFastqFolder
  • 64xls
  • 33bed bedMethyl
  • 33bigBed bedMethyl
  • 23hic
  • 22bedpe bed3+
  • 8csv
  • 6bed bed3
  • 4hdf5
  • 4tar
  • 3bed bedgraph
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tbi
  • 1vcf
Organism
  • 1244Homo sapiens
Biosample type
  • 427cell line
  • 400primary cell
  • 334tissue
  • 86in vitro differentiated cells
  • 4stem cell
Organ
  • 465liver
  • 465pancreas
  • 251epithelium
  • connective tissue
  • 60blood
  • 60bodily fluid
  • 44adipose tissue
  • 27embryo
  • 24spleen
  • 21brain
  • 6vasculature
  • 3blood vessel
  • 2musculature of body
Project
  • 1088AMP
  • 163HPAP
Genome assembly (visualization)
  • 935hg19
  • 876GRCh38
  • 5hg18
Lab
  • 1062AMP-T2D consortium
  • 163Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 28inconsistent control
  • 27audit script error
  • 11inconsistent ontology term
Audit category:
  • 72missing controlled_by
Audit category:
  • 50inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
organ_slims!
  • connective tissue
BIOSAMPLE
ASSAY

1251 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
DNase-seq
WGBS
GRO-seq
RRBS
FAIRE-seq
Hi-C
cell line
HepG2360511
GM1287860
primary cell
pancreatic alpha cell13521213
Langerhans cell3427
pancreatic beta cell13211210
exocrine cell39
pancreatic ductal cell13494
tissue
islet of Langerhans289762011
liver67211
body of pancreas33422
spleen20112
pancreas1621
in vitro differentiated cells
pancreatic endoderm1841
hepatocyte15
definitive endodermal cell821
primitive gut cell821
Posterior foregut51
stem cell
hESC31
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