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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 785ChIP-seq
  • 156total RNA-seq
  • 68single cell RNA-seq
  • 29ATAC-seq
  • 27snATAC-seq
  • 12DNase-seq
  • 11WGBS
  • 5GRO-seq
  • 4RRBS
  • 2FAIRE-seq
  • 1Hi-C
  • 1pCHi-C
Assay category
  • 785DNA binding
  • 224Transcription
  • 70DNA accessibility
  • 15DNA methylation
  • 13D chromatin structure
Target of assay
  • 450transcription factor
  • 179histone modification
  • 178histone
  • 151control
  • 95broad histone mark
  • 85RNA binding protein
  • 82narrow histone mark
  • 82recombinant protein
  • 35chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 318November, 2017
  • 258August, 2017
  • 88November, 2018
  • 75December, 2017
  • 58October, 2018
  • 39February, 2018
  • 39February, 2021
  • 39February, 2023
  • 35December, 2018
  • 30January, 2019
  • 24May, 2022
  • 22September, 2020
  • 17July, 2018
  • 17October, 2017
  • 15April, 2018
  • 12September, 2018
  • 6September, 2017
  • 5January, 2018
  • 2June, 2018
  • 1August, 2018
  • 1March, 2019
Available data
  • 3075bam
  • 2868bigWig
  • 1666bed narrowPeak
  • 1444tsv
  • 1101fastq
  • 966bigBed narrowPeak
  • 391tagAlign
  • 300bed broadPeak
  • 263bigBed broadPeak
  • 252bed bed3+
  • 161txt
  • 73zippedFastqFolder
  • 64xls
  • 30bed bedMethyl
  • 30bigBed bedMethyl
  • 18bedpe bed3+
  • 17hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 3hdf5
  • 3tar
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1094Homo sapiens
Biosample type
  • 427cell line
  • 377tissue
  • 171primary cell
  • 122in vitro differentiated cells
  • 4stem cell
Organ
  • 471pancreas
  • 465liver
  • epithelium
  • 101connective tissue
  • 60blood
  • 60bodily fluid
  • 44adipose tissue
  • 27embryo
  • 24spleen
  • 21brain
  • 6vasculature
  • 3blood vessel
  • 2musculature of body
Project
  • 1001AMP
  • 100HPAP
Genome assembly (visualization)
  • 835hg19
  • 770GRCh38
  • 5hg18
Lab
  • 975AMP-T2D consortium
  • 100Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 28inconsistent control
  • 27audit script error
  • 6inconsistent ontology term
Audit category:
  • 68missing controlled_by
Audit category:
  • 51inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
organ_slims!
  • epithelium
BIOSAMPLE
ASSAY

1101 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
DNase-seq
WGBS
GRO-seq
RRBS
FAIRE-seq
Hi-C
pCHi-C
cell line
HepG2360511
GM1287860
tissue
islet of Langerhans289762011
liver67211
body of pancreas33422
spleen20112
pancreas1621
primary cell
Langerhans cell3427
exocrine cell39
pancreatic endocrine cell23
skeletal muscle myoblast1511
pancreatic cell9
in vitro differentiated cells
adipocyte531
pancreatic endoderm1841
definitive endodermal cell821
primitive gut cell821
Posterior foregut51
stem cell
hESC31
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