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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 405ChIP-seq
  • 232total RNA-seq
  • 134single cell RNA-seq
  • 60ATAC-seq
  • 27snATAC-seq
  • 15WGBS
  • 9DNase-seq
  • 5GRO-seq
  • 3RRBS
  • 2FAIRE-seq
  • 1pCHi-C
Assay category
  • 405DNA binding
  • 366Transcription
  • 98DNA accessibility
  • 18DNA methylation
Target of assay
  • 185histone
  • 185histone modification
  • 127transcription factor
  • 93broad histone mark
  • 91control
  • 91narrow histone mark
  • 32RNA binding protein
  • 13chromatin remodeller
  • 3other context
  • 3other post-translational modification
Date released
  • 259August, 2017
  • 76February, 2023
  • 73September, 2018
  • 60October, 2018
  • 50July, 2018
  • 45February, 2021
  • 44April, 2018
  • 41September, 2020
  • 39February, 2018
  • 35November, 2018
  • 34December, 2018
  • 31December, 2017
  • 25January, 2019
  • 24May, 2022
  • 17October, 2017
  • 11September, 2017
  • 9November, 2017
  • 7August, 2020
  • 5January, 2018
  • 4August, 2018
  • 3June, 2018
  • 1March, 2019
Available data
  • 2711bam
  • 2547bigWig
  • 1426tsv
  • 1376bed narrowPeak
  • 893fastq
  • 684bigBed narrowPeak
  • 312tagAlign
  • 260bed bed3+
  • 259bed broadPeak
  • 222bigBed broadPeak
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 33bed bedMethyl
  • 33bigBed bedMethyl
  • 21bedpe bed3+
  • 21hic
  • 11bed bed3
  • 7bed bedgraph
  • 7csv
  • 4hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tar
Organism
  • 886Homo sapiens
Biosample type
  • 409primary cell
  • 294tissue
  • 126in vitro differentiated cells
  • 60cell line
  • 4stem cell
Organ
  • 471pancreas
  • liver
  • 257epithelium
  • 101connective tissue
  • 60blood
  • 60bodily fluid
  • 44adipose tissue
  • 27embryo
  • 24spleen
  • 21brain
  • 6vasculature
  • 3blood vessel
  • 2musculature of body
Project
  • 724AMP
  • 169HPAP
Genome assembly (visualization)
  • 618hg19
  • 608GRCh38
  • 5hg18
Lab
  • 698AMP-T2D consortium
  • 169Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 27audit script error
  • 11inconsistent ontology term
  • 1inconsistent control
Audit category:
  • 76missing controlled_by
Audit category:
  • 29inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
organ_slims!
  • liver
BIOSAMPLE
ASSAY

893 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
GRO-seq
RRBS
FAIRE-seq
pCHi-C
primary cell
pancreatic alpha cell135212136
Langerhans cell3427
pancreatic beta cell13211210
exocrine cell39
pancreatic ductal cell13494
tissue
islet of Langerhans289762011
body of pancreas33422
spleen20121
pancreas1621
omental fat pad1111
in vitro differentiated cells
adipocyte531
pancreatic endoderm1841
definitive endodermal cell821
primitive gut cell821
Posterior foregut51
cell line
GM1287860
stem cell
hESC31
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