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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 710ChIP-seq
  • 59single cell RNA-seq
  • 59total RNA-seq
  • 27snATAC-seq
  • 9DNase-seq
  • 7WGBS
  • 5ATAC-seq
  • 5GRO-seq
  • 4RRBS
  • 1Hi-C
  • 1pCHi-C
Assay category
  • 710DNA binding
  • 118Transcription
  • 41DNA accessibility
  • 11DNA methylation
  • 13D chromatin structure
Target of assay
  • 437transcription factor
  • 138control
  • 130histone modification
  • 129histone
  • 82recombinant protein
  • 81RNA binding protein
  • 66broad histone mark
  • 62narrow histone mark
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 324November, 2017
  • 119August, 2017
  • 94December, 2017
  • 81November, 2018
  • 39February, 2018
  • 39February, 2021
  • 39February, 2023
  • 35December, 2018
  • 30January, 2019
  • 23October, 2018
  • 22September, 2020
  • 12October, 2017
  • 11July, 2018
  • 10April, 2018
  • 5January, 2018
  • 2June, 2018
  • 1August, 2018
  • 1September, 2018
Available data
  • 2703bam
  • 2546bigWig
  • 1603bed narrowPeak
  • 1183tsv
  • 951bigBed narrowPeak
  • 887fastq
  • 379tagAlign
  • 301bed broadPeak
  • 278bigBed broadPeak
  • 244bed bed3+
  • 155txt
  • 73zippedFastqFolder
  • 64xls
  • 30bed bedMethyl
  • 30bigBed bedMethyl
  • 16bedpe bed3+
  • 16hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 4hdf5
  • 4tar
  • 2ibed
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 887Homo sapiens
Biosample type
  • 427cell line
  • 164tissue
  • 151primary cell
  • 141in vitro differentiated cells
  • 4stem cell
Organ
  • pancreas
  • 465liver
  • 257epithelium
  • 101connective tissue
  • 60blood
  • 60bodily fluid
  • 44adipose tissue
  • 27embryo
  • 24spleen
  • 21brain
  • 6vasculature
  • 3blood vessel
  • 2musculature of body
Project
  • 787AMP
  • 100HPAP
Genome assembly (visualization)
  • 645hg19
  • 594GRCh38
  • 5hg18
Lab
  • 787AMP-T2D consortium
  • 100Klaus Kaestner, Upenn
Audit category:
  • 28inconsistent control
  • 27audit script error
  • 6inconsistent ontology term
Audit category:
  • 35missing controlled_by
Audit category:
  • 47inconsistent control read length
  • 9inconsistent control run_type
  • 2inconsistent assembly
organ_slims!
  • pancreas
BIOSAMPLE
ASSAY

887 results

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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
snATAC-seq
DNase-seq
WGBS
ATAC-seq
GRO-seq
RRBS
Hi-C
pCHi-C
cell line
HepG2360511
GM1287860
tissue
liver67211
spleen20121
omental fat pad1111
subcutaneous adipose tissue121
right lobe of liver1011
primary cell
Langerhans cell3427
exocrine cell39
skeletal muscle myoblast1511
pancreatic cell9
mesenchymal cell6
in vitro differentiated cells
adipocyte531
pancreatic endoderm1841
hepatocyte15
definitive endodermal cell821
primitive gut cell821
stem cell
hESC31
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