Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 37ChIP-seq
  • 3WGBS
  • 2ATAC-seq
  • 1DNase-seq
  • 1pCHi-C
Assay category
  • 37DNA binding
  • 3DNA accessibility
  • 3DNA methylation
Target of assay
  • 19control
  • 17transcription factor
  • 5RNA binding protein
  • 1histone
  • 1histone modification
  • 1narrow histone mark
Date released
  • 23October, 2018
  • 18August, 2017
  • 1August, 2018
  • 1November, 2018
  • 1October, 2017
Available data
  • 442bam
  • 425bigWig
  • 401tsv
  • 44fastq
  • 13bed narrowPeak
  • 10bigBed narrowPeak
  • 8tagAlign
  • 6bed bed3+
  • 3bed broadPeak
  • 2bed bedMethyl
  • 2bigBed bedMethyl
  • 2bigBed broadPeak
  • 1bedpe bed3+
Organism
  • 44Homo sapiens
Biosample type
  • 43tissue
  • 1in vitro differentiated cells
Organ
  • 471pancreas
  • 465liver
  • 257epithelium
  • 101connective tissue
  • 60blood
  • 60bodily fluid
  • 44adipose tissue
  • 27embryo
  • 24spleen
  • 21brain
  • 6vasculature
  • 3blood vessel
  • 2musculature of body
Project
  • 44AMP
Genome assembly (visualization)
  • 23GRCh38
  • 21hg19
Lab
  • 44AMP-T2D consortium
Audit category:
  • 12missing controlled_by
BIOSAMPLE
ASSAY

44 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
WGBS
ATAC-seq
DNase-seq
pCHi-C
tissue
omental fat pad1111
subcutaneous adipose tissue121
white adipose tissue12
adipose tissue23
in vitro differentiated cells
white fat cell1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego