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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
132
ChIP-seq
81
total RNA-seq
66
single cell RNA-seq
32
ATAC-seq
6
WGBS
Assay category
147
Transcription
132
DNA binding
32
DNA accessibility
6
DNA methylation
Target of assay
55
transcription factor
52
histone
52
histone modification
29
narrow histone mark
23
broad histone mark
23
control
14
RNA binding protein
11
chromatin remodeller
Date released
61
September, 2018
37
February, 2023
33
July, 2018
29
April, 2018
29
August, 2017
27
December, 2018
19
December, 2017
19
September, 2020
18
January, 2019
15
November, 2018
7
August, 2020
6
February, 2021
6
November, 2017
5
September, 2017
3
August, 2018
2
October, 2018
1
June, 2018
Available data
377
bam
356
bigWig
317
fastq
205
bed narrowPeak
157
tsv
130
bigBed narrowPeak
80
zippedFastqFolder
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
317
Homo sapiens
Biosample type
238
primary cell
60
cell line
19
in vitro differentiated cells
Organ
471
pancreas
463
liver
257
epithelium
101
connective tissue
60
blood
60
bodily fluid
44
adipose tissue
27
embryo
21
brain
21
spleen
6
vasculature
3
blood vessel
2
musculature of body
0
lung
Project
248
AMP
69
HPAP
Genome assembly (visualization)
235
GRCh38
227
hg19
Lab
248
AMP-T2D consortium
69
Klaus Kaestner, Upenn
Audit category:
5
inconsistent ontology term
1
inconsistent control
Audit category:
21
missing controlled_by
Audit category:
5
inconsistent control read length
target.investigated_as!
other post-translational modification
BIOSAMPLE
ASSAY
317 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
WGBS
primary cell
pancreatic alpha cell
13
52
12
13
6
pancreatic beta cell
13
21
12
10
pancreatic ductal cell
13
4
9
4
pancreatic acinar cell
8
4
9
5
pancreatic delta cell
11
+ See 5 more…
cell line
GM12878
60
in vitro differentiated cells
hepatocyte
15
Hepatic endoderm
4
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