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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
ChIP-seq
81
total RNA-seq
66
single cell RNA-seq
33
ATAC-seq
6
WGBS
2
DNase-seq
Assay category
147
Transcription
84
DNA binding
35
DNA accessibility
6
DNA methylation
Target of assay
59
histone
59
histone modification
30
narrow histone mark
29
broad histone mark
20
control
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
61
September, 2018
37
February, 2023
33
July, 2018
29
April, 2018
29
August, 2017
19
December, 2017
19
September, 2020
10
October, 2017
9
November, 2017
7
August, 2020
6
February, 2021
5
September, 2017
3
August, 2018
2
November, 2018
2
October, 2018
1
June, 2018
Available data
707
bam
642
bigWig
461
bed narrowPeak
272
fastq
260
bigBed narrowPeak
249
tsv
131
tagAlign
80
zippedFastqFolder
69
bed broadPeak
60
bigBed broadPeak
59
bed bed3+
8
bed bedMethyl
8
bigBed bedMethyl
7
hic
6
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tagAlign bed3+
1
tar
Organism
272
Homo sapiens
Biosample type
241
primary cell
19
in vitro differentiated cells
12
tissue
Organ
471
pancreas
465
liver
257
epithelium
101
connective tissue
60
blood
60
bodily fluid
44
adipose tissue
27
embryo
24
spleen
21
brain
6
vasculature
3
blood vessel
2
musculature of body
Project
203
AMP
69
HPAP
Genome assembly (visualization)
192
GRCh38
184
hg19
Lab
203
AMP-T2D consortium
69
Klaus Kaestner, Upenn
Audit category:
5
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
5
inconsistent control read length
BIOSAMPLE
ASSAY
272 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
WGBS
DNase-seq
primary cell
pancreatic alpha cell
13
52
12
13
6
pancreatic beta cell
13
21
12
10
pancreatic ductal cell
13
4
9
4
pancreatic acinar cell
8
4
9
5
pancreatic delta cell
11
+ See 6 more…
in vitro differentiated cells
hepatocyte
15
Hepatic endoderm
4
tissue
brain
9
2
cerebellum (Hemisphere)
1
See all biosamples
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