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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 18ChIP-seq
  • 2DNase-seq
  • 1ATAC-seq
Assay category
  • 18DNA binding
  • 3DNA accessibility
Target of assay
  • 10histone
  • 10histone modification
  • 6broad histone mark
  • 5control
  • 4narrow histone mark
  • 3RNA binding protein
  • 3transcription factor
Date released
  • 10October, 2017
  • 9November, 2017
  • 2November, 2018
Available data
  • 243bam
  • 222bigWig
  • 203bed narrowPeak
  • 127bigBed narrowPeak
  • 118tagAlign
  • 47bed broadPeak
  • 38bigBed broadPeak
  • 35bed bed3+
  • 26tsv
  • 21fastq
  • 3hdf5
  • 2bed bedMethyl
  • 2bigBed bedMethyl
  • 1bed bed3
  • 1tagAlign bed3+
Organism
  • 21Homo sapiens
Biosample type
  • 12tissue
  • 9primary cell
Organ
  • 471pancreas
  • 465liver
  • 257epithelium
  • 101connective tissue
  • 60blood
  • 60bodily fluid
  • 44adipose tissue
  • 27embryo
  • 24spleen
  • 21brain
  • 6vasculature
  • 3blood vessel
  • 2musculature of body
Project
  • 21AMP
Genome assembly (visualization)
  • 17hg19
  • 15GRCh38
Lab
  • 21AMP-T2D consortium
Audit category:
  • 4missing controlled_by
BIOSAMPLE
ASSAY

21 results

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ChIP-seq
DNase-seq
ATAC-seq
tissue
brain92
cerebellum (Hemisphere)1
primary cell
astrocyte of the cerebellum3
brain microvascular endothelial cell3
choroid plexus epithelial cell3
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