Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 90ChIP-seq
  • 3WGBS
  • 3single cell RNA-seq
  • 2ATAC-seq
  • 2DNase-seq
  • 1pCHi-C
Assay category
  • 90DNA binding
  • 4DNA accessibility
  • 3DNA methylation
  • 3Transcription
Target of assay
  • 39transcription factor
  • 26histone
  • 26histone modification
  • 25control
  • 13narrow histone mark
  • 12broad histone mark
  • 9RNA binding protein
  • 2chromatin remodeller
Date released
  • 72August, 2017
  • 23October, 2018
  • 2July, 2018
  • 1April, 2018
  • 1August, 2018
  • 1November, 2018
  • 1October, 2017
Available data
  • 593bam
  • 570bigWig
  • 478tsv
  • 101fastq
  • 75bed narrowPeak
  • 28bigBed narrowPeak
  • 27bed bed3+
  • 22tagAlign
  • 10bed broadPeak
  • 9bigBed broadPeak
  • 6bed bed3
  • 4bed bedgraph
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 1bedpe bed3+
  • 1hdf5
Organism
  • 101Homo sapiens
Biosample type
  • 55in vitro differentiated cells
  • 43tissue
  • 3primary cell
Organ
  • 471pancreas
  • 465liver
  • 257epithelium
  • 101connective tissue
  • 60blood
  • 60bodily fluid
  • 44adipose tissue
  • 27embryo
  • 24spleen
  • 21brain
  • 6vasculature
  • 3blood vessel
  • 2musculature of body
Project
  • 101AMP
Genome assembly (visualization)
  • 75GRCh38
  • 73hg19
Lab
  • 101AMP-T2D consortium
Audit category:
  • 17missing controlled_by
Audit category:
  • 6inconsistent control read length
BIOSAMPLE
ASSAY

101 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
WGBS
single cell RNA-seq
ATAC-seq
DNase-seq
pCHi-C
in vitro differentiated cells
adipocyte531
white fat cell1
tissue
omental fat pad1111
subcutaneous adipose tissue121
white adipose tissue12
adipose tissue23
primary cell
pancreatic stellate cell3
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego