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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 81total RNA-seq
  • 72ChIP-seq
  • 66single cell RNA-seq
  • 32ATAC-seq
  • 6WGBS
Assay category
  • 147Transcription
  • 72DNA binding
  • 32DNA accessibility
  • 6DNA methylation
Target of assay
  • 51histone
  • 51histone modification
  • 28narrow histone mark
  • 23broad histone mark
  • 17control
  • 4RNA binding protein
  • 4transcription factor
  • 1chromatin remodeller
Date released
  • 61September, 2018
  • 37February, 2023
  • 33July, 2018
  • 29April, 2018
  • 29August, 2017
  • 19December, 2017
  • 19September, 2020
  • 7August, 2020
  • 6February, 2021
  • 6November, 2017
  • 5September, 2017
  • 3August, 2018
  • 2October, 2018
  • 1June, 2018
Available data
  • 317bam
  • 301bigWig
  • 257fastq
  • 156tsv
  • 151bed narrowPeak
  • 80zippedFastqFolder
  • 76bigBed narrowPeak
  • 22bed broadPeak
  • 22bigBed broadPeak
  • 21bed bed3+
  • 7tagAlign
  • 6bed bedMethyl
  • 6bigBed bedMethyl
  • 6hic
  • 5bedpe bed3+
  • 3cool
  • 2hdf5
  • 1tar
Organism
  • 257Homo sapiens
Biosample type
  • 238primary cell
  • 19in vitro differentiated cells
Organ
  • 471pancreas
  • 465liver
  • 257epithelium
  • 101connective tissue
  • 60blood
  • 60bodily fluid
  • 44adipose tissue
  • 27embryo
  • 24spleen
  • 21brain
  • 6vasculature
  • 3blood vessel
  • 2musculature of body
Project
  • 188AMP
  • 69HPAP
Genome assembly (visualization)
  • 181GRCh38
  • 173hg19
Lab
  • 188AMP-T2D consortium
  • 69Klaus Kaestner, Upenn
Audit category:
  • 5inconsistent ontology term
Audit category:
  • 21missing controlled_by
Audit category:
  • 5inconsistent control read length
BIOSAMPLE
ASSAY

257 results

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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
WGBS
primary cell
pancreatic alpha cell521312136
pancreatic beta cell21131210
pancreatic ductal cell41394
pancreatic acinar cell4895
pancreatic delta cell11
in vitro differentiated cells
hepatocyte15
Hepatic endoderm4
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