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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
452
ChIP-seq
5
total RNA-seq
3
DNase-seq
2
WGBS
1
ATAC-seq
1
Hi-C
1
RRBS
Assay category
452
DNA binding
5
Transcription
4
DNA accessibility
3
DNA methylation
1
3D chromatin structure
Target of assay
327
transcription factor
82
recombinant protein
77
control
57
RNA binding protein
45
histone modification
44
histone
25
broad histone mark
23
chromatin remodeller
19
narrow histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
63
December, 2017
53
November, 2018
28
August, 2017
5
January, 2019
1
December, 2018
Available data
681
bam
622
bigWig
465
fastq
441
bed narrowPeak
358
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
465
Homo sapiens
Biosample type
367
cell line
83
tissue
15
in vitro differentiated cells
Organ
471
pancreas
465
liver
257
epithelium
101
connective tissue
60
blood
60
bodily fluid
44
adipose tissue
27
embryo
24
spleen
21
brain
6
vasculature
3
blood vessel
2
musculature of body
Project
465
AMP
Genome assembly (visualization)
390
hg19
343
GRCh38
Lab
465
AMP-T2D consortium
Audit category:
27
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
465 results
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ChIP-seq
total RNA-seq
DNase-seq
WGBS
ATAC-seq
Hi-C
RRBS
cell line
HepG2
360
5
1
1
tissue
liver
67
2
1
1
right lobe of liver
10
1
1
in vitro differentiated cells
hepatocyte
15
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