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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 178total RNA-seq
  • 147ChIP-seq
  • 75single cell RNA-seq
  • 56ATAC-seq
  • 10WGBS
  • 3DNase-seq
  • 2FAIRE-seq
Assay category
  • 253Transcription
  • 147DNA binding
  • 61DNA accessibility
  • 10DNA methylation
Target of assay
  • 100histone
  • 100histone modification
  • 52broad histone mark
  • 48narrow histone mark
  • 30control
  • 17transcription factor
  • 8RNA binding protein
Date released
  • 168August, 2017
  • 72September, 2018
  • 39July, 2018
  • 37February, 2023
  • 37October, 2018
  • 34April, 2018
  • 24May, 2022
  • 19September, 2020
  • 11September, 2017
  • 7August, 2020
  • 7November, 2018
  • 6February, 2021
  • 5October, 2017
  • 3August, 2018
  • 1June, 2018
  • 1March, 2019
Available data
  • 689bam
  • 623bigWig
  • 471fastq
  • 417tsv
  • 214bed narrowPeak
  • 91bigBed narrowPeak
  • 80zippedFastqFolder
  • 29bed bed3+
  • 21bed broadPeak
  • 19tagAlign
  • 7bedpe bed3+
  • 7bigBed broadPeak
  • 7hic
  • 6bed bedMethyl
  • 6bigBed bedMethyl
  • 6txt
  • 3cool
  • 1bedpe
  • 1hdf5
Organism
  • 464Homo sapiens
Biosample type
  • 258primary cell
  • 213tissue
Organ
  • 471pancreas
  • 465liver
  • 257epithelium
  • 101connective tissue
  • 60blood
  • 60bodily fluid
  • 44adipose tissue
  • 27embryo
  • 24spleen
  • 21brain
  • 6vasculature
  • 3blood vessel
  • 2musculature of body
Project
  • 402AMP
  • 69HPAP
Genome assembly (visualization)
  • 363hg19
  • 357GRCh38
Lab
  • 376AMP-T2D consortium
  • 69Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 5inconsistent ontology term
Audit category:
  • 54missing controlled_by
Audit category:
  • 9inconsistent control read length
  • 1inconsistent assembly
BIOSAMPLE
ASSAY

471 results

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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
WGBS
DNase-seq
FAIRE-seq
primary cell
pancreatic alpha cell521312136
pancreatic beta cell21131210
pancreatic ductal cell41394
pancreatic acinar cell4895
pancreatic endocrine cell23
tissue
islet of Langerhans972862011
body of pancreas33422
pancreas1621
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