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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 857ChIP-seq
  • 61ATAC-seq
  • 27snATAC-seq
  • 17WGBS
  • 12DNase-seq
  • 5GRO-seq
  • 5total RNA-seq
  • 4RRBS
  • 2FAIRE-seq
  • 1Hi-C
  • 1pCHi-C
Assay category
  • 857DNA binding
  • 102DNA accessibility
  • 21DNA methylation
  • 5Transcription
  • 13D chromatin structure
Target of assay
  • 454transcription factor
  • 230histone modification
  • 229histone
  • 168control
  • 118broad histone mark
  • 110narrow histone mark
  • 89RNA binding protein
  • 82recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 324November, 2017
  • 198August, 2017
  • 94December, 2017
  • 87November, 2018
  • 58October, 2018
  • 46September, 2018
  • 35December, 2018
  • 33February, 2021
  • 30January, 2019
  • 24February, 2018
  • 18May, 2022
  • 17October, 2017
  • 11September, 2017
  • 7August, 2020
  • 5January, 2018
  • 3September, 2020
  • 1August, 2018
  • 1March, 2019
Available data
  • 2057bam
  • 1838bigWig
  • 1817bed narrowPeak
  • 1042bigBed narrowPeak
  • 992fastq
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 271bed bed3+
  • 122tsv
  • 101zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 5txt
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 985Homo sapiens
Biosample type
  • 427cell line
  • 274tissue
  • 161primary cell
  • 126in vitro differentiated cells
  • 4stem cell
Organ
  • 465liver
  • 218pancreas
  • 110epithelium
  • 98connective tissue
  • 60blood
  • 60bodily fluid
  • 44adipose tissue
  • 24spleen
  • 23embryo
  • 21brain
  • 6vasculature
  • 3blood vessel
  • 2musculature of body
Project
  • 949AMP
  • 43HPAP
Genome assembly (visualization)
  • 776hg19
  • 719GRCh38
  • 5hg18
Lab
  • 929AMP-T2D consortium
  • 43Klaus Kaestner, Upenn
  • 18Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 28inconsistent control
  • 27audit script error
  • 4inconsistent ontology term
Audit category:
  • 89missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
replicates.library.nucleic_acid_term_name!
  • RNA
BIOSAMPLE
ASSAY

992 results

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Clear Filters
ChIP-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
GRO-seq
total RNA-seq
RRBS
FAIRE-seq
Hi-C
pCHi-C
cell line
HepG2360151
GM1287860
tissue
liver67121
islet of Langerhans282011
body of pancreas33422
spleen20121
pancreas1621
primary cell
pancreatic alpha cell13136
Langerhans cell27
pancreatic beta cell1310
pancreatic endocrine cell23
pancreatic ductal cell134
in vitro differentiated cells
adipocyte531
pancreatic endoderm181
hepatocyte15
definitive endodermal cell81
primitive gut cell81
stem cell
hESC31
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