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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 819ChIP-seq
  • 234total RNA-seq
  • 59ATAC-seq
  • 51single cell RNA-seq
  • 27snATAC-seq
  • 17WGBS
  • 10DNase-seq
  • 5GRO-seq
  • 4RRBS
  • 1FAIRE-seq
  • 1Hi-C
  • 1pCHi-C
Assay category
  • 819DNA binding
  • 285Transcription
  • 97DNA accessibility
  • 21DNA methylation
  • 13D chromatin structure
Target of assay
  • 433transcription factor
  • 218histone modification
  • 217histone
  • 163control
  • 112broad histone mark
  • 104narrow histone mark
  • 86RNA binding protein
  • 82recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 324November, 2017
  • 254August, 2017
  • 91December, 2017
  • 86November, 2018
  • 76February, 2023
  • 72September, 2018
  • 59October, 2018
  • 45February, 2021
  • 41September, 2020
  • 38February, 2018
  • 35December, 2018
  • 30January, 2019
  • 24May, 2022
  • 16October, 2017
  • 9September, 2017
  • 8April, 2018
  • 7August, 2020
  • 6July, 2018
  • 5January, 2018
  • 2June, 2018
  • 1August, 2018
Available data
  • 2909bam
  • 2702bigWig
  • 1644bed narrowPeak
  • 1298tsv
  • 1229fastq
  • 1002bigBed narrowPeak
  • 296bed broadPeak
  • 282tagAlign
  • 261bigBed broadPeak
  • 205bed bed3+
  • 156txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 16bedpe bed3+
  • 15hic
  • 7bed bedgraph
  • 6bed bed3
  • 6csv
  • 5hdf5
  • 4tar
  • 2ibed
  • 1vcf
Organism
  • 1222Homo sapiens
Biosample type
  • 427cell line
  • 333tissue
  • 332primary cell
  • 133in vitro differentiated cells
  • 4stem cell
Organ
  • 458liver
  • 377pancreas
  • 199epithelium
  • 87connective tissue
  • 60blood
  • 60bodily fluid
  • 40adipose tissue
  • 27embryo
  • 24spleen
  • 21brain
  • 6vasculature
  • 3blood vessel
  • 2musculature of body
Project
  • 1060AMP
  • 169HPAP
Genome assembly (visualization)
  • 882hg19
  • 826GRCh38
  • 5hg18
Lab
  • 1036AMP-T2D consortium
  • 169Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
Audit category:
  • 28inconsistent control
  • 27audit script error
  • 7inconsistent ontology term
Audit category:
  • 75missing controlled_by
Audit category:
  • 52inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
replication_type!
  • anisogenic
BIOSAMPLE
ASSAY

1229 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
GRO-seq
RRBS
FAIRE-seq
Hi-C
pCHi-C
cell line
HepG2360511
GM1287860
tissue
islet of Langerhans895181
liver61111
body of pancreas33422
spleen20121
pancreas152
primary cell
pancreatic alpha cell13521316
Langerhans cell3427
pancreatic beta cell1321101
exocrine cell39
pancreatic endocrine cell23
in vitro differentiated cells
adipocyte461
pancreatic endoderm1841
hepatocyte15
definitive endodermal cell821
primitive gut cell821
stem cell
hESC31
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