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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 376ChIP-seq
  • 232total RNA-seq
  • 133single cell RNA-seq
  • 61ATAC-seq
  • 27snATAC-seq
  • 10DNase-seq
  • 10WGBS
  • 5GRO-seq
  • 2FAIRE-seq
  • 1pCHi-C
Assay category
  • 376DNA binding
  • 365Transcription
  • 100DNA accessibility
  • 10DNA methylation
Target of assay
  • 168histone modification
  • 167histone
  • 126control
  • 88broad histone mark
  • 82transcription factor
  • 78narrow histone mark
  • 20RNA binding protein
  • 4chromatin remodeller
  • 3other context
  • 3other post-translational modification
  • 1recombinant protein
Date released
  • 265August, 2017
  • 76February, 2023
  • 73September, 2018
  • 53October, 2018
  • 49July, 2018
  • 44April, 2018
  • 41September, 2020
  • 39February, 2018
  • 39February, 2021
  • 35December, 2017
  • 29November, 2017
  • 26November, 2018
  • 24May, 2022
  • 17October, 2017
  • 11September, 2017
  • 9January, 2019
  • 7August, 2020
  • 7December, 2018
  • 5January, 2018
  • 4August, 2018
  • 3June, 2018
  • 1March, 2019
Available data
  • 2716bam
  • 2558bigWig
  • 1531tsv
  • 1262bed narrowPeak
  • 857fastq
  • 553bigBed narrowPeak
  • 372tagAlign
  • 234bed bed3+
  • 223bed broadPeak
  • 186bigBed broadPeak
  • 158txt
  • 153zippedFastqFolder
  • 64xls
  • 19hic
  • 17bedpe bed3+
  • 16bed bedMethyl
  • 16bigBed bedMethyl
  • 11bed bed3
  • 8csv
  • 3cool
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 850Homo sapiens
Biosample type
  • 378primary cell
  • 334tissue
  • 113in vitro differentiated cells
  • 31cell line
  • 1stem cell
Organ
  • 457pancreas
  • 231epithelium
  • 100connective tissue
  • 76liver
  • 44adipose tissue
  • 24embryo
  • 24spleen
  • 15brain
  • 4blood
  • 4bodily fluid
  • 2vasculature
  • 1blood vessel
Project
  • 694AMP
  • 163HPAP
Genome assembly (visualization)
  • 550hg19
  • 542GRCh38
  • 5hg18
Lab
  • 668AMP-T2D consortium
  • 163Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 27audit script error
  • 11inconsistent ontology term
Audit category:
  • 77missing controlled_by
Audit category:
  • 22inconsistent control read length
  • 1inconsistent assembly
replication_type!
  • isogenic
BIOSAMPLE
ASSAY

857 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
DNase-seq
WGBS
GRO-seq
FAIRE-seq
pCHi-C
primary cell
pancreatic alpha cell13521213
Langerhans cell3427
pancreatic beta cell12211210
exocrine cell39
pancreatic ductal cell13494
pancreatic acinar cell8495
pancreatic endocrine cell23
pancreatic delta cell11
pancreatic polypeptide-secreting cell9
pancreatic cell8
mesenchymal cell6
pancreatic stellate cell3
co-expressing pancreatic endocrine cell2
endothelial cell2
enteroendocrine cell2
mast cell2
pancreatic epsilon cell2
unclassified exocrine cell2
unclassified pancreatic endocrine cell2
astrocyte of the cerebellum1
brain microvascular endothelial cell1
choroid plexus epithelial cell1
tissue
islet of Langerhans289762011
liver3621
body of pancreas26422
spleen20112
pancreas1621
omental fat pad1111
subcutaneous adipose tissue121
white adipose tissue12
brain92
right lobe of liver811
adipose tissue23
cerebellum (Hemisphere)1
in vitro differentiated cells
adipocyte53
pancreatic endoderm1541
definitive endodermal cell521
primitive gut cell521
embryonic stem cell32
endocrine cell32
posterior foregut32
Hepatic endoderm4
Posterior foregut21
islet precursor cell1
white fat cell1
cell line
HepG227
GM128784
stem cell
hESC1
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