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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 519ChIP-seq
  • 84single cell RNA-seq
  • 8total RNA-seq
  • 7WGBS
  • 4DNase-seq
  • 4RRBS
  • 2ATAC-seq
  • 1FAIRE-seq
  • 1Hi-C
Assay category
  • 519DNA binding
  • 92Transcription
  • 11DNA methylation
  • 7DNA accessibility
  • 13D chromatin structure
Target of assay
  • 393transcription factor
  • 81recombinant protein
  • 74histone
  • 74histone modification
  • 72RNA binding protein
  • 47control
  • 38narrow histone mark
  • 36broad histone mark
  • 32chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 295November, 2017
  • 64November, 2018
  • 62December, 2017
  • 55August, 2017
  • 45July, 2018
  • 36April, 2018
  • 28December, 2018
  • 21January, 2019
  • 8October, 2018
  • 6February, 2021
  • 3August, 2018
  • 2September, 2017
  • 1February, 2018
  • 1June, 2018
  • 1March, 2019
  • 1October, 2017
  • 1September, 2018
Available data
  • 1159bam
  • 1078bigWig
  • 728bed narrowPeak
  • 630fastq
  • 529bigBed narrowPeak
  • 371tsv
  • 142tagAlign
  • 125bed broadPeak
  • 123bigBed broadPeak
  • 107bed bed3+
  • 20bed bedMethyl
  • 20bigBed bedMethyl
  • 13bedpe bed3+
  • 12hic
  • 8txt
  • 7bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2csv
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 630Homo sapiens
Biosample type
  • 396cell line
  • 108primary cell
  • 87tissue
  • 36in vitro differentiated cells
  • 3stem cell
Organ
  • 396liver
  • 108pancreas
  • 84epithelium
  • 56blood
  • 56bodily fluid
  • 15connective tissue
  • 6brain
  • 4adipose tissue
  • 4vasculature
  • 3embryo
  • 2blood vessel
  • 2musculature of body
Project
  • 624AMP
  • 6HPAP
Genome assembly (visualization)
  • 584hg19
  • 534GRCh38
Lab
  • 622AMP-T2D consortium
  • 6Klaus Kaestner, Upenn
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 28inconsistent control
  • 4inconsistent ontology term
Audit category:
  • 26missing controlled_by
Audit category:
  • 38inconsistent control read length
  • 9inconsistent control run_type
  • 2inconsistent assembly
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

630 results

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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
WGBS
DNase-seq
RRBS
ATAC-seq
FAIRE-seq
Hi-C
cell line
HepG2333511
GM1287856
primary cell
pancreatic alpha cell116
skeletal muscle myoblast1511
pancreatic beta cell111
pancreatic delta cell10
pancreatic ductal cell8
tissue
liver3711
islet of Langerhans206212
body of pancreas7
white adipose tissue4
pancreas11
in vitro differentiated cells
hepatocyte15
adipocyte71
Posterior foregut3
definitive endodermal cell3
pancreatic endoderm3
stem cell
hESC3
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