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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 83single cell RNA-seq
  • 38ChIP-seq
  • 3total RNA-seq
  • 2ATAC-seq
  • 2DNase-seq
  • 1FAIRE-seq
Assay category
  • 86Transcription
  • 38DNA binding
  • 5DNA accessibility
Target of assay
  • 21transcription factor
  • 12histone
  • 12histone modification
  • 6broad histone mark
  • 6narrow histone mark
  • 5control
  • 3RNA binding protein
Date released
  • 44July, 2018
  • 36April, 2018
  • 33August, 2017
  • 3August, 2018
  • 3December, 2017
  • 2November, 2018
  • 2September, 2017
  • 1February, 2018
  • 1June, 2018
  • 1March, 2019
  • 1October, 2017
  • 1October, 2018
  • 1September, 2018
Available data
  • 483bam
  • 467bigWig
  • 302tsv
  • 173bed narrowPeak
  • 129fastq
  • 116tagAlign
  • 68bed bed3+
  • 40bigBed narrowPeak
  • 26bed broadPeak
  • 24bigBed broadPeak
  • 8hic
  • 7bedpe bed3+
  • 6bed bed3
  • 5txt
  • 3cool
  • 2csv
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 129Homo sapiens
Biosample type
  • 77primary cell
  • 44tissue
  • 8in vitro differentiated cells
Organ
  • 94pancreas
  • 58epithelium
  • 14connective tissue
  • 7liver
  • 4adipose tissue
Project
  • 129AMP
Genome assembly (visualization)
  • 126hg19
  • 125GRCh38
Lab
  • 127AMP-T2D consortium
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 4inconsistent ontology term
Audit category:
  • 14missing controlled_by
Audit category:
  • 4inconsistent control read length
BIOSAMPLE
ASSAY

129 results

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Clear Filters
single cell RNA-seq
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
FAIRE-seq
primary cell
pancreatic alpha cell11
pancreatic beta cell11
pancreatic delta cell10
pancreatic ductal cell8
pancreatic acinar cell7
tissue
islet of Langerhans620221
liver61
white adipose tissue4
pancreas11
in vitro differentiated cells
adipocyte7
islet precursor cell1
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