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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
83
single cell RNA-seq
38
ChIP-seq
3
total RNA-seq
2
ATAC-seq
2
DNase-seq
1
FAIRE-seq
Assay category
86
Transcription
38
DNA binding
5
DNA accessibility
Target of assay
21
transcription factor
12
histone
12
histone modification
6
broad histone mark
6
narrow histone mark
5
control
3
RNA binding protein
Date released
44
July, 2018
36
April, 2018
33
August, 2017
3
August, 2018
3
December, 2017
2
November, 2018
2
September, 2017
1
February, 2018
1
June, 2018
1
March, 2019
1
October, 2017
1
October, 2018
1
September, 2018
Available data
483
bam
467
bigWig
302
tsv
173
bed narrowPeak
129
fastq
116
tagAlign
68
bed bed3+
40
bigBed narrowPeak
26
bed broadPeak
24
bigBed broadPeak
8
hic
7
bedpe bed3+
6
bed bed3
5
txt
3
cool
2
csv
1
bedpe
1
tagAlign bed3+
Organism
129
Homo sapiens
Biosample type
77
primary cell
44
tissue
8
in vitro differentiated cells
Organ
94
pancreas
58
epithelium
14
connective tissue
7
liver
4
adipose tissue
Project
129
AMP
Genome assembly (visualization)
126
hg19
125
GRCh38
Lab
127
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
14
missing controlled_by
Audit category:
4
inconsistent control read length
BIOSAMPLE
ASSAY
129 results
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single cell RNA-seq
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
FAIRE-seq
primary cell
pancreatic alpha cell
11
pancreatic beta cell
11
pancreatic delta cell
10
pancreatic ductal cell
8
pancreatic acinar cell
7
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tissue
islet of Langerhans
6
20
2
2
1
liver
6
1
white adipose tissue
4
pancreas
1
1
in vitro differentiated cells
adipocyte
7
islet precursor cell
1
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