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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 481ChIP-seq
  • 7WGBS
  • 5total RNA-seq
  • 4RRBS
  • 2DNase-seq
  • 1Hi-C
  • 1single cell RNA-seq
Assay category
  • 481DNA binding
  • 11DNA methylation
  • 6Transcription
  • 2DNA accessibility
  • 13D chromatin structure
Target of assay
  • 372transcription factor
  • 81recombinant protein
  • 69RNA binding protein
  • 62histone
  • 62histone modification
  • 42control
  • 32chromatin remodeller
  • 32narrow histone mark
  • 30broad histone mark
  • 2other context
  • 2other post-translational modification
Date released
  • 295November, 2017
  • 62November, 2018
  • 59December, 2017
  • 28December, 2018
  • 22August, 2017
  • 21January, 2019
  • 7October, 2018
  • 6February, 2021
  • 1July, 2018
Available data
  • 676bam
  • 611bigWig
  • 555bed narrowPeak
  • 501fastq
  • 489bigBed narrowPeak
  • 99bed broadPeak
  • 99bigBed broadPeak
  • 69tsv
  • 39bed bed3+
  • 26tagAlign
  • 20bed bedMethyl
  • 20bigBed bedMethyl
  • 7bed bedgraph
  • 6bedpe bed3+
  • 5hdf5
  • 4hic
  • 4tar
  • 3txt
  • 2ibed
  • 1bed bed3
Organism
  • 501Homo sapiens
Biosample type
  • 396cell line
  • 43tissue
  • 31primary cell
  • 28in vitro differentiated cells
  • 3stem cell
Organ
  • 389liver
  • 56blood
  • 56bodily fluid
  • 26epithelium
  • 14pancreas
  • 6brain
  • 4vasculature
  • 3embryo
  • 2blood vessel
  • 2musculature of body
  • 1connective tissue
Project
  • 495AMP
  • 6HPAP
Genome assembly (visualization)
  • 458hg19
  • 409GRCh38
Lab
  • 495AMP-T2D consortium
  • 6Klaus Kaestner, Upenn
Audit category:
  • 28inconsistent control
Audit category:
  • 12missing controlled_by
Audit category:
  • 34inconsistent control read length
  • 9inconsistent control run_type
  • 2inconsistent assembly
BIOSAMPLE
ASSAY

501 results

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Clear Filters
ChIP-seq
WGBS
total RNA-seq
RRBS
DNase-seq
Hi-C
single cell RNA-seq
cell line
HepG2333151
GM1287856
tissue
liver311
body of pancreas7
right lobe of liver2
skeletal muscle tissue2
primary cell
skeletal muscle myoblast1511
pancreatic alpha cell6
astrocyte of the cerebellum2
brain microvascular endothelial cell2
choroid plexus epithelial cell2
in vitro differentiated cells
hepatocyte15
Posterior foregut3
definitive endodermal cell3
pancreatic endoderm3
primitive gut cell3
stem cell
hESC3
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