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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 338ChIP-seq
  • 229total RNA-seq
  • 59ATAC-seq
  • 50single cell RNA-seq
  • 27snATAC-seq
  • 10WGBS
  • 8DNase-seq
  • 5GRO-seq
  • 1FAIRE-seq
  • 1pCHi-C
Assay category
  • 338DNA binding
  • 279Transcription
  • 95DNA accessibility
  • 10DNA methylation
Target of assay
  • 156histone modification
  • 155histone
  • 121control
  • 82broad histone mark
  • 72narrow histone mark
  • 61transcription factor
  • 17RNA binding protein
  • 4chromatin remodeller
  • 3other context
  • 3other post-translational modification
  • 1recombinant protein
Date released
  • 232August, 2017
  • 76February, 2023
  • 72September, 2018
  • 52October, 2018
  • 41September, 2020
  • 39February, 2021
  • 38February, 2018
  • 32December, 2017
  • 29November, 2017
  • 24May, 2022
  • 24November, 2018
  • 16October, 2017
  • 9January, 2019
  • 9September, 2017
  • 8April, 2018
  • 7August, 2020
  • 7December, 2018
  • 5January, 2018
  • 5July, 2018
  • 2June, 2018
  • 1August, 2018
Available data
  • 2233bam
  • 2091bigWig
  • 1229tsv
  • 1089bed narrowPeak
  • 728fastq
  • 513bigBed narrowPeak
  • 256tagAlign
  • 197bed broadPeak
  • 166bed bed3+
  • 162bigBed broadPeak
  • 153txt
  • 153zippedFastqFolder
  • 64xls
  • 16bed bedMethyl
  • 16bigBed bedMethyl
  • 11hic
  • 10bedpe bed3+
  • 6csv
  • 5bed bed3
  • 1vcf
Organism
  • 721Homo sapiens
Biosample type
  • 301primary cell
  • 290tissue
  • 105in vitro differentiated cells
  • 31cell line
  • 1stem cell
Organ
  • 363pancreas
  • 173epithelium
  • 86connective tissue
  • 69liver
  • 40adipose tissue
  • 24embryo
  • 24spleen
  • 15brain
  • 4blood
  • 4bodily fluid
  • 2vasculature
  • 1blood vessel
Project
  • 565AMP
  • 163HPAP
Genome assembly (visualization)
  • 424hg19
  • 417GRCh38
  • 5hg18
Lab
  • 541AMP-T2D consortium
  • 163Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
Audit category:
  • 27audit script error
  • 7inconsistent ontology term
Audit category:
  • 63missing controlled_by
Audit category:
  • 18inconsistent control read length
  • 1inconsistent assembly
BIOSAMPLE
ASSAY

728 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
GRO-seq
FAIRE-seq
pCHi-C
primary cell
pancreatic alpha cell1352131
Langerhans cell3427
pancreatic beta cell1221101
exocrine cell39
pancreatic endocrine cell23
tissue
islet of Langerhans895181
body of pancreas26422
liver3011
spleen20121
pancreas152
in vitro differentiated cells
adipocyte46
pancreatic endoderm1541
definitive endodermal cell521
primitive gut cell521
embryonic stem cell32
cell line
HepG227
GM128784
stem cell
hESC1
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