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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 768ChIP-seq
  • 237total RNA-seq
  • 134single cell RNA-seq
  • 61ATAC-seq
  • 27snATAC-seq
  • 12DNase-seq
  • 11WGBS
  • 5GRO-seq
  • 4RRBS
  • 2FAIRE-seq
  • 1Hi-C
  • 1pCHi-C
Assay category
  • 768DNA binding
  • 371Transcription
  • 102DNA accessibility
  • 15DNA methylation
  • 13D chromatin structure
Target of assay
  • 454transcription factor
  • 230histone modification
  • 229histone
  • 168control
  • 118broad histone mark
  • 110narrow histone mark
  • RNA binding protein
  • 82recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 287November, 2017
  • 279August, 2017
  • 90December, 2017
  • 76February, 2023
  • 73September, 2018
  • 67November, 2018
  • 50July, 2018
  • 49October, 2018
  • 44April, 2018
  • 41September, 2020
  • 39February, 2018
  • 39February, 2021
  • 33December, 2018
  • 24January, 2019
  • 24May, 2022
  • 17October, 2017
  • 11September, 2017
  • 7August, 2020
  • 5January, 2018
  • 4August, 2018
  • 3June, 2018
  • 1March, 2019
Available data
  • 3289bam
  • 3063bigWig
  • 1712bed narrowPeak
  • 1601tsv
  • 1263fastq
  • 949bigBed narrowPeak
  • 398tagAlign
  • 313bed broadPeak
  • 276bigBed broadPeak
  • 272bed bed3+
  • 161txt
  • 112zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 3cool
  • 3tar
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tbi
  • 1vcf
Organism
  • 1256Homo sapiens
Biosample type
  • 398primary cell
  • 364cell line
  • 362tissue
  • 135in vitro differentiated cells
  • 4stem cell
Organ
  • 457pancreas
  • 408liver
  • 247epithelium
  • 92connective tissue
  • 50blood
  • 50bodily fluid
  • 39adipose tissue
  • 27embryo
  • 24spleen
  • 18brain
  • 4vasculature
  • 2blood vessel
  • 2musculature of body
Project
  • 1100AMP
  • 163HPAP
Genome assembly (visualization)
  • 922hg19
  • 869GRCh38
  • 5hg18
Lab
  • 1074AMP-T2D consortium
  • 163Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 28inconsistent control
  • 27audit script error
  • 11inconsistent ontology term
Audit category:
  • 86missing controlled_by
Audit category:
  • 50inconsistent control read length
  • 6inconsistent control run_type
  • 3inconsistent assembly
target.investigated_as!
  • RNA binding protein
BIOSAMPLE
ASSAY

1263 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
DNase-seq
WGBS
GRO-seq
RRBS
FAIRE-seq
Hi-C
pCHi-C
primary cell
pancreatic alpha cell13521213
Langerhans cell3427
pancreatic beta cell13211210
exocrine cell39
pancreatic ductal cell13494
cell line
HepG2307511
GM1287850
tissue
islet of Langerhans269762011
liver66211
body of pancreas28422
spleen20112
pancreas1521
in vitro differentiated cells
adipocyte491
pancreatic endoderm1841
hepatocyte13
definitive endodermal cell821
primitive gut cell821
stem cell
hESC31
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