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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 739ChIP-seq
  • 237total RNA-seq
  • 134single cell RNA-seq
  • 61ATAC-seq
  • 27snATAC-seq
  • 17WGBS
  • 12DNase-seq
  • 5GRO-seq
  • 4RRBS
  • 2FAIRE-seq
  • 1Hi-C
  • 1pCHi-C
Assay category
  • 739DNA binding
  • 371Transcription
  • 102DNA accessibility
  • 21DNA methylation
  • 13D chromatin structure
Target of assay
  • 454transcription factor
  • 230histone modification
  • 229histone
  • 168control
  • broad histone mark
  • 110narrow histone mark
  • 89RNA binding protein
  • 82recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 316November, 2017
  • 238August, 2017
  • 88November, 2018
  • 79December, 2017
  • 76February, 2023
  • 56September, 2018
  • 50July, 2018
  • 49October, 2018
  • 45February, 2021
  • 44April, 2018
  • 41September, 2020
  • 35December, 2018
  • 31February, 2018
  • 26January, 2019
  • 24May, 2022
  • 11October, 2017
  • 11September, 2017
  • 7August, 2020
  • 5January, 2018
  • 4August, 2018
  • 3June, 2018
  • 1March, 2019
Available data
  • 3014bam
  • 2742bigWig
  • 1600tsv
  • 1397bed narrowPeak
  • 1240fastq
  • 800bigBed narrowPeak
  • 286bed broadPeak
  • 269bigBed broadPeak
  • 261bed bed3+
  • 251tagAlign
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1237Homo sapiens
Biosample type
  • 419cell line
  • 376primary cell
  • 332tissue
  • 110in vitro differentiated cells
  • 3stem cell
Organ
  • 440liver
  • 419pancreas
  • 234epithelium
  • 89connective tissue
  • 60blood
  • 60bodily fluid
  • 44adipose tissue
  • 23embryo
  • 20spleen
  • 15brain
  • 6vasculature
  • 3blood vessel
  • 2musculature of body
Project
  • 1071AMP
  • 169HPAP
Genome assembly (visualization)
  • 891hg19
  • 835GRCh38
  • 5hg18
Lab
  • 1045AMP-T2D consortium
  • 169Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 28inconsistent control
  • 27audit script error
  • 11inconsistent ontology term
Audit category:
  • 64missing controlled_by
Audit category:
  • 41inconsistent control read length
  • 9inconsistent control run_type
  • 1inconsistent assembly
target.investigated_as!
  • broad histone mark
BIOSAMPLE
ASSAY

1240 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
GRO-seq
RRBS
FAIRE-seq
Hi-C
pCHi-C
cell line
HepG2352511
GM1287860
primary cell
pancreatic alpha cell105212136
Langerhans cell3427
pancreatic beta cell10211210
exocrine cell39
pancreatic ductal cell7494
tissue
islet of Langerhans229762011
liver60121
body of pancreas22422
spleen16121
omental fat pad1111
in vitro differentiated cells
adipocyte411
pancreatic endoderm1441
definitive endodermal cell621
primitive gut cell621
hepatocyte8
stem cell
hESC21
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