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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 689ChIP-seq
  • 237total RNA-seq
  • 134single cell RNA-seq
  • 61ATAC-seq
  • 27snATAC-seq
  • 17WGBS
  • 12DNase-seq
  • 5GRO-seq
  • 4RRBS
  • 2FAIRE-seq
  • 1Hi-C
  • 1pCHi-C
Assay category
  • 689DNA binding
  • 371Transcription
  • 102DNA accessibility
  • 21DNA methylation
  • 13D chromatin structure
Target of assay
  • 454transcription factor
  • 230histone modification
  • 229histone
  • control
  • 118broad histone mark
  • 110narrow histone mark
  • 89RNA binding protein
  • 82recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 265November, 2017
  • 256August, 2017
  • 82November, 2018
  • 76February, 2023
  • 73December, 2017
  • 73September, 2018
  • 50July, 2018
  • 45February, 2021
  • 44April, 2018
  • 41September, 2020
  • 33October, 2018
  • 31December, 2018
  • 31February, 2018
  • 26January, 2019
  • 24May, 2022
  • 15October, 2017
  • 7August, 2020
  • 5January, 2018
  • 5September, 2017
  • 4August, 2018
  • 3June, 2018
  • 1March, 2019
Available data
  • 3146bigWig
  • 3086bam
  • 1817bed narrowPeak
  • 1597tsv
  • 1190fastq
  • 1042bigBed narrowPeak
  • 330tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 264bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1184Homo sapiens
Biosample type
  • 393primary cell
  • 365cell line
  • 310tissue
  • 119in vitro differentiated cells
  • 3stem cell
Organ
  • 441pancreas
  • 388liver
  • 240epithelium
  • 76connective tissue
  • 54blood
  • 54bodily fluid
  • 25adipose tissue
  • 20embryo
  • 16brain
  • 16spleen
  • 4vasculature
  • 2blood vessel
  • 2musculature of body
Project
  • 1021AMP
  • 169HPAP
Genome assembly (visualization)
  • 982hg19
  • 942GRCh38
  • 5hg18
Lab
  • 995AMP-T2D consortium
  • 169Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 28inconsistent control
  • 27audit script error
  • 9inconsistent ontology term
Audit category:
  • 89missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
target.investigated_as!
  • control
BIOSAMPLE
ASSAY

1190 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
GRO-seq
RRBS
FAIRE-seq
Hi-C
pCHi-C
primary cell
pancreatic alpha cell75212136
Langerhans cell3427
pancreatic beta cell7211210
exocrine cell39
pancreatic ductal cell13494
cell line
HepG2304511
GM1287854
tissue
islet of Langerhans219762011
liver50121
body of pancreas25422
pancreas1321
spleen12121
in vitro differentiated cells
adipocyte471
pancreatic endoderm1341
hepatocyte14
definitive endodermal cell621
primitive gut cell621
stem cell
hESC21
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