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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 627ChIP-seq
  • 237total RNA-seq
  • 134single cell RNA-seq
  • 61ATAC-seq
  • 27snATAC-seq
  • 17WGBS
  • 12DNase-seq
  • 5GRO-seq
  • 4RRBS
  • 2FAIRE-seq
  • 1Hi-C
  • 1pCHi-C
Assay category
  • 627DNA binding
  • 371Transcription
  • 102DNA accessibility
  • 21DNA methylation
  • 13D chromatin structure
Target of assay
  • 454transcription factor
  • histone modification
  • 229histone
  • 168control
  • 118broad histone mark
  • 110narrow histone mark
  • 89RNA binding protein
  • 82recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 306November, 2017
  • 184August, 2017
  • 88November, 2018
  • 76February, 2023
  • 63December, 2017
  • 50July, 2018
  • 45February, 2021
  • 44April, 2018
  • 44October, 2018
  • 41September, 2018
  • 41September, 2020
  • 35December, 2018
  • 24May, 2022
  • 23February, 2018
  • 23January, 2019
  • 11September, 2017
  • 10October, 2017
  • 7August, 2020
  • 5January, 2018
  • 4August, 2018
  • 3June, 2018
  • 1March, 2019
Available data
  • 2607bam
  • 2300bigWig
  • 1600tsv
  • 1128fastq
  • 966bed narrowPeak
  • 651bigBed narrowPeak
  • 257bed broadPeak
  • 255bigBed broadPeak
  • 248bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 77tagAlign
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1vcf
Organism
  • 1127Homo sapiens
Biosample type
  • 411cell line
  • 336primary cell
  • 303tissue
  • 76in vitro differentiated cells
  • 2stem cell
Organ
  • 420liver
  • 371pancreas
  • 206epithelium
  • 75connective tissue
  • 59blood
  • 59bodily fluid
  • 43adipose tissue
  • 18spleen
  • 15embryo
  • 11brain
  • 4vasculature
  • 2blood vessel
  • 2musculature of body
Project
  • 959AMP
  • 169HPAP
Genome assembly (visualization)
  • 780hg19
  • 725GRCh38
  • 5hg18
Lab
  • 933AMP-T2D consortium
  • 169Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 28inconsistent control
  • 27audit script error
  • 9inconsistent ontology term
Audit category:
  • 35missing controlled_by
Audit category:
  • 25inconsistent control read length
  • 8inconsistent control run_type
target.investigated_as!
  • histone modification
BIOSAMPLE
ASSAY

1128 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
GRO-seq
RRBS
FAIRE-seq
Hi-C
pCHi-C
cell line
HepG2345511
GM1287859
primary cell
pancreatic alpha cell65212136
Langerhans cell3427
pancreatic beta cell6211210
exocrine cell39
pancreatic acinar cell495
tissue
islet of Langerhans149762011
liver54121
body of pancreas17422
spleen14121
omental fat pad1111
in vitro differentiated cells
adipocyte281
pancreatic endoderm841
definitive endodermal cell421
primitive gut cell421
Posterior foregut31
stem cell
hESC11
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