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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 747ChIP-seq
  • 237total RNA-seq
  • 134single cell RNA-seq
  • 61ATAC-seq
  • 27snATAC-seq
  • 17WGBS
  • 12DNase-seq
  • 5GRO-seq
  • 4RRBS
  • 2FAIRE-seq
  • 1Hi-C
  • 1pCHi-C
Assay category
  • 747DNA binding
  • 371Transcription
  • 102DNA accessibility
  • 21DNA methylation
  • 13D chromatin structure
Target of assay
  • 454transcription factor
  • 230histone modification
  • 229histone
  • 168control
  • 118broad histone mark
  • narrow histone mark
  • 89RNA binding protein
  • 82recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 314November, 2017
  • 235August, 2017
  • 88November, 2018
  • 78December, 2017
  • 76February, 2023
  • 58September, 2018
  • 55October, 2018
  • 50July, 2018
  • 45February, 2021
  • 44April, 2018
  • 41September, 2020
  • 35December, 2018
  • 31February, 2018
  • 27January, 2019
  • 24May, 2022
  • 16October, 2017
  • 11September, 2017
  • 7August, 2020
  • 5January, 2018
  • 4August, 2018
  • 3June, 2018
  • 1March, 2019
Available data
  • 2987bam
  • 2729bigWig
  • 1600tsv
  • 1388bed narrowPeak
  • 1248fastq
  • 893bigBed narrowPeak
  • 293bed broadPeak
  • 271bigBed broadPeak
  • 260bed bed3+
  • 224tagAlign
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1vcf
Organism
  • 1243Homo sapiens
Biosample type
  • 419cell line
  • 369primary cell
  • 349tissue
  • 108in vitro differentiated cells
  • 3stem cell
Organ
  • 446liver
  • 423pancreas
  • 229epithelium
  • 88connective tissue
  • 59blood
  • 59bodily fluid
  • 43adipose tissue
  • 22spleen
  • 19embryo
  • 17brain
  • 4vasculature
  • 2blood vessel
  • 2musculature of body
Project
  • 1079AMP
  • 169HPAP
Genome assembly (visualization)
  • 899hg19
  • 843GRCh38
  • 5hg18
Lab
  • 1053AMP-T2D consortium
  • 169Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 28inconsistent control
  • 27audit script error
  • 9inconsistent ontology term
Audit category:
  • 60missing controlled_by
Audit category:
  • 40inconsistent control read length
  • 8inconsistent control run_type
  • 2inconsistent assembly
target.investigated_as!
  • narrow histone mark
BIOSAMPLE
ASSAY

1248 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
GRO-seq
RRBS
FAIRE-seq
Hi-C
pCHi-C
cell line
HepG2353511
GM1287859
primary cell
pancreatic alpha cell95212136
Langerhans cell3427
pancreatic beta cell9211210
exocrine cell39
pancreatic ductal cell6494
tissue
islet of Langerhans209762011
liver62121
body of pancreas28422
spleen18121
pancreas1221
in vitro differentiated cells
adipocyte411
pancreatic endoderm1241
hepatocyte10
definitive endodermal cell621
primitive gut cell621
stem cell
hESC21
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