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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 775ChIP-seq
  • 237total RNA-seq
  • 134single cell RNA-seq
  • 61ATAC-seq
  • 27snATAC-seq
  • 17WGBS
  • 12DNase-seq
  • 5GRO-seq
  • 4RRBS
  • 2FAIRE-seq
  • 1Hi-C
  • 1pCHi-C
Assay category
  • 775DNA binding
  • 371Transcription
  • 102DNA accessibility
  • 21DNA methylation
  • 13D chromatin structure
Target of assay
  • 454transcription factor
  • 230histone modification
  • 229histone
  • 168control
  • 118broad histone mark
  • 110narrow histone mark
  • 89RNA binding protein
  • recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 287August, 2017
  • 258November, 2017
  • 94December, 2017
  • 76February, 2023
  • 73September, 2018
  • 72November, 2018
  • 60October, 2018
  • 50July, 2018
  • 45February, 2021
  • 44April, 2018
  • 41September, 2020
  • 39February, 2018
  • 35December, 2018
  • 30January, 2019
  • 24May, 2022
  • 17October, 2017
  • 11September, 2017
  • 7August, 2020
  • 5January, 2018
  • 4August, 2018
  • 3June, 2018
  • 1March, 2019
Available data
  • 3303bam
  • 3081bigWig
  • 1729bed narrowPeak
  • 1600tsv
  • 1276fastq
  • 961bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 273bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1269Homo sapiens
Biosample type
  • 409primary cell
  • 377tissue
  • 345cell line
  • 141in vitro differentiated cells
  • 4stem cell
Organ
  • 471pancreas
  • 383liver
  • 257epithelium
  • 101connective tissue
  • 60blood
  • 60bodily fluid
  • 44adipose tissue
  • 27embryo
  • 24spleen
  • 21brain
  • 6vasculature
  • 3blood vessel
  • 2musculature of body
Project
  • 1107AMP
  • 169HPAP
Genome assembly (visualization)
  • 930hg19
  • 870GRCh38
  • 5hg18
Lab
  • 1081AMP-T2D consortium
  • 169Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 28inconsistent control
  • 27audit script error
  • 11inconsistent ontology term
Audit category:
  • 88missing controlled_by
Audit category:
  • 55inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
target.investigated_as!
  • recombinant protein
BIOSAMPLE
ASSAY

1276 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
GRO-seq
RRBS
FAIRE-seq
Hi-C
pCHi-C
primary cell
pancreatic alpha cell135212136
Langerhans cell3427
pancreatic beta cell13211210
exocrine cell39
pancreatic ductal cell13494
tissue
islet of Langerhans289762011
liver67121
body of pancreas33422
spleen20121
pancreas1621
cell line
HepG2278511
GM1287860
in vitro differentiated cells
adipocyte531
pancreatic endoderm1841
hepatocyte15
definitive endodermal cell821
primitive gut cell821
stem cell
hESC31
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