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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 403ChIP-seq
  • 237total RNA-seq
  • 134single cell RNA-seq
  • 61ATAC-seq
  • 27snATAC-seq
  • 17WGBS
  • 12DNase-seq
  • 5GRO-seq
  • 4RRBS
  • 2FAIRE-seq
  • 1Hi-C
  • 1pCHi-C
Assay category
  • 403DNA binding
  • 371Transcription
  • 102DNA accessibility
  • 21DNA methylation
  • 13D chromatin structure
Target of assay
  • transcription factor
  • 230histone modification
  • 229histone
  • 168control
  • 118broad histone mark
  • 110narrow histone mark
  • 89RNA binding protein
  • 82recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 240August, 2017
  • 80November, 2017
  • 76February, 2023
  • 73September, 2018
  • 52December, 2017
  • 50July, 2018
  • 45February, 2021
  • 45October, 2018
  • 44April, 2018
  • 41September, 2020
  • 39February, 2018
  • 24May, 2022
  • 24November, 2018
  • 17October, 2017
  • 16January, 2019
  • 11September, 2017
  • 7August, 2020
  • 7December, 2018
  • 5January, 2018
  • 4August, 2018
  • 3June, 2018
  • 1March, 2019
Available data
  • 2907bam
  • 2673bigWig
  • 1600tsv
  • 1348bed narrowPeak
  • 904fastq
  • 637bigBed narrowPeak
  • 389tagAlign
  • 273bed broadPeak
  • 254bed bed3+
  • 236bigBed broadPeak
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tar
  • 1vcf
Organism
  • 897Homo sapiens
Biosample type
  • 404primary cell
  • 298tissue
  • 108in vitro differentiated cells
  • 90cell line
  • 4stem cell
Organ
  • 454pancreas
  • 253epithelium
  • 138liver
  • 62connective tissue
  • 27adipose tissue
  • 24embryo
  • 18brain
  • 18spleen
  • 9blood
  • 9bodily fluid
  • 4vasculature
  • 2blood vessel
  • 2musculature of body
Project
  • 735AMP
  • 169HPAP
Genome assembly (visualization)
  • 563hg19
  • 539GRCh38
  • 5hg18
Lab
  • 709AMP-T2D consortium
  • 169Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 27audit script error
  • 11inconsistent ontology term
Audit category:
  • 54missing controlled_by
Audit category:
  • 31inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
target.investigated_as!
  • transcription factor
BIOSAMPLE
ASSAY

904 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
GRO-seq
RRBS
FAIRE-seq
Hi-C
pCHi-C
primary cell
pancreatic alpha cell135212136
Langerhans cell3427
pancreatic beta cell13211210
exocrine cell39
pancreatic ductal cell13494
tissue
islet of Langerhans219762011
liver30121
body of pancreas24422
pancreas1521
spleen14121
in vitro differentiated cells
adipocyte311
pancreatic endoderm1541
hepatocyte13
definitive endodermal cell621
primitive gut cell621
cell line
HepG274511
GM128789
stem cell
hESC31
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