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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 230ChIP-seq
Assay category
  • 230DNA binding
Target of assay
  • 454transcription factor
  • 230histone modification
  • 229histone
  • 168control
  • 118broad histone mark
  • 110narrow histone mark
  • 89RNA binding protein
  • 82recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 103August, 2017
  • 32September, 2018
  • 31December, 2017
  • 18November, 2017
  • 16February, 2018
  • 16October, 2018
  • 7January, 2019
  • 7October, 2017
Available data
  • 869bigWig
  • 851bed narrowPeak
  • 785bam
  • 391bigBed narrowPeak
  • 321tagAlign
  • 230fastq
  • 65bed broadPeak
  • 30bigBed broadPeak
  • 25bed bed3+
  • 1tagAlign bed3+
Organism
  • 224Homo sapiens
Biosample type
  • 74tissue
  • 73primary cell
  • 65in vitro differentiated cells
  • 16cell line
  • 2stem cell
Organ
  • 100pancreas
  • 51epithelium
  • 45liver
  • 26connective tissue
  • 12embryo
  • 10brain
  • 6spleen
  • 2vasculature
  • 1adipose tissue
  • 1blood
  • 1blood vessel
  • 1bodily fluid
Project
  • 230AMP
Genome assembly (visualization)
  • 228hg19
  • 226GRCh38
Lab
  • 230AMP-T2D consortium
Audit category:
  • 2inconsistent ontology term
Audit category:
  • 54missing controlled_by
Audit category:
  • 31inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
BIOSAMPLE
ASSAY

230 results

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Clear Filters
ChIP-seq
tissue
body of pancreas16
islet of Langerhans14
liver13
pancreas12
brain7
primary cell
pancreatic endocrine cell23
pancreatic ductal cell13
skeletal muscle myoblast12
pancreatic acinar cell8
pancreatic alpha cell7
in vitro differentiated cells
adipocyte25
hepatocyte12
pancreatic endoderm10
definitive endodermal cell4
primitive gut cell4
cell line
HepG215
GM128781
stem cell
hESC2
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