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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 110ChIP-seq
Assay category
  • 110DNA binding
Target of assay
  • 454transcription factor
  • 230histone modification
  • 229histone
  • 168control
  • 118broad histone mark
  • 110narrow histone mark
  • 89RNA binding protein
  • 82recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 52August, 2017
  • 16December, 2017
  • 15September, 2018
  • 10November, 2017
  • 8February, 2018
  • 5October, 2018
  • 3January, 2019
  • 1October, 2017
Available data
  • 440bigWig
  • 429bed narrowPeak
  • 405bam
  • 174tagAlign
  • 149bigBed narrowPeak
  • 110fastq
  • 29bed broadPeak
  • 14bigBed broadPeak
  • 13bed bed3+
  • 1tagAlign bed3+
Organism
  • 108Homo sapiens
Biosample type
  • 40primary cell
  • 33in vitro differentiated cells
  • 28tissue
  • 8cell line
  • 1stem cell
Organ
  • 48pancreas
  • 28epithelium
  • 19liver
  • 13connective tissue
  • 8embryo
  • 4brain
  • 2spleen
  • 2vasculature
  • 1adipose tissue
  • 1blood
  • 1blood vessel
  • 1bodily fluid
Project
  • 110AMP
Genome assembly (visualization)
  • 109hg19
  • 108GRCh38
Lab
  • 110AMP-T2D consortium
Audit category:
  • 2inconsistent ontology term
Audit category:
  • 29missing controlled_by
Audit category:
  • 16inconsistent control read length
  • 1inconsistent assembly
  • 1inconsistent control run_type
BIOSAMPLE
ASSAY

110 results

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Clear Filters
ChIP-seq
primary cell
pancreatic endocrine cell12
pancreatic ductal cell7
skeletal muscle myoblast6
pancreatic acinar cell4
pancreatic alpha cell4
in vitro differentiated cells
adipocyte12
pancreatic endoderm6
hepatocyte5
Hepatic endoderm2
definitive endodermal cell2
tissue
islet of Langerhans8
body of pancreas5
liver5
pancreas4
right lobe of liver2
cell line
HepG27
GM128781
stem cell
hESC1
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