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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 454ChIP-seq
Assay category
  • 454DNA binding
Target of assay
  • 454transcription factor
  • 230histone modification
  • 229histone
  • 168control
  • 118broad histone mark
  • 110narrow histone mark
  • 89RNA binding protein
  • 82recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 244November, 2017
  • 64November, 2018
  • 47August, 2017
  • 42December, 2017
  • 28December, 2018
  • 15October, 2018
  • 14January, 2019
Available data
  • 496bigWig
  • 485bam
  • 469bed narrowPeak
  • 454fastq
  • 405bigBed narrowPeak
  • 49bed broadPeak
  • 49bigBed broadPeak
  • 19bed bed3+
  • 9tagAlign
  • 3tar
Organism
  • 454Homo sapiens
Biosample type
  • 337cell line
  • 79tissue
  • 33in vitro differentiated cells
  • 5primary cell
Organ
  • 327liver
  • 51blood
  • 51bodily fluid
  • 39connective tissue
  • 17adipose tissue
  • 17pancreas
  • 6spleen
  • 4epithelium
  • 3brain
  • 3embryo
  • 2vasculature
  • 1blood vessel
Project
  • 454AMP
Genome assembly (visualization)
  • 445hg19
  • 412GRCh38
Lab
  • 454AMP-T2D consortium
Audit category:
  • 28inconsistent control
Audit category:
  • 35missing controlled_by
Audit category:
  • 25inconsistent control read length
  • 8inconsistent control run_type
BIOSAMPLE
ASSAY

454 results

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Clear Filters
ChIP-seq
cell line
HepG2286
GM1287851
tissue
liver37
white adipose tissue12
body of pancreas9
islet of Langerhans7
spleen6
in vitro differentiated cells
adipocyte22
pancreatic endoderm3
Posterior foregut2
definitive endodermal cell2
hepatocyte2
primary cell
skeletal muscle myoblast2
astrocyte of the cerebellum1
brain microvascular endothelial cell1
choroid plexus epithelial cell1
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