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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
10
total RNA-seq
3
ATAC-seq
1
Hi-C
1
MPRA
1
snATAC-seq
Assay category
10
Transcription
4
DNA accessibility
1
3D chromatin structure
Date released
84
February, 2021
7
February, 2023
7
May, 2022
July, 2019
1
October, 2019
1
October, 2022
Available data
3173
bam
2960
bigWig
1628
bed narrowPeak
1517
tsv
1358
fastq
937
bigBed narrowPeak
398
tagAlign
244
bed broadPeak
207
bigBed broadPeak
191
bed bed3+
153
zippedFastqFolder
99
txt
23
bedpe bed3+
22
hic
13
bed bedMethyl
13
bigBed bedMethyl
12
bed bed3
7
bed bedgraph
4
tar
3
cool
3
csv
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
99
Homo sapiens
Biosample type
95
tissue
3
in vitro differentiated cells
2
cell line
Organ
88
bone element
kidney
7
pancreas
4
skeleton
1
musculature of body
Project
100
AMP
Genome assembly (visualization)
5
hg19
1
GRCh38
Lab
91
AMP-T2D consortium
6
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
85
inconsistent ontology term
1
audit script error
Audit category:
1
inconsistent assembly
month_released!
July, 2019
organ_slims!
kidney
BIOSAMPLE
ASSAY
100 results
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RNA microarray
total RNA-seq
ATAC-seq
Hi-C
MPRA
snATAC-seq
tissue
bone element
84
islet of Langerhans
6
acetabular part of hip bone
1
ilium
1
ischium
1
+ See 2 more…
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
MIN6
1
Panc1
1
See all biosamples
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